| Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani, K Gelmon, S Chia, ... Nature 518 (7539), 422-426, 2015 | 686 | 2015 |
| Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer M Murtaza, SJ Dawson, K Pogrebniak, OM Rueda, E Provenzano, J Grant, ... Nature communications 6 (1), 8760, 2015 | 532 | 2015 |
| Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden MS Anglesio, A Bashashati, YK Wang, J Senz, G Ha, W Yang, MR Aniba, ... The Journal of pathology 236 (2), 201-209, 2015 | 172 | 2015 |
| A-to-I editing of microRNAs in the mammalian brain increases during development Y Ekdahl, HS Farahani, M Behm, J Lagergren, M Öhman Genome Research 22 (8), 1477-1487, 2012 | 130 | 2012 |
| Synthesis of diagnostic quality cancer pathology images by generative adversarial networks AB Levine, J Peng, D Farnell, M Nursey, Y Wang, JR Naso, H Ren, ... The Journal of pathology 252 (2), 178-188, 2020 | 112 | 2020 |
| clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers KR Campbell, A Steif, E Laks, H Zahn, D Lai, A McPherson, H Farahani, ... bioRxiv, 344309, 2018 | 107* | 2018 |
| A morphology focused diffusion probabilistic model for synthesis of histopathology images PA Moghadam, S Van Dalen, KC Martin, J Lennerz, S Yip, H Farahani, ... Proceedings of the IEEE/CVF Winter Conference on Applications of Computer …, 2023 | 100 | 2023 |
| The utility of color normalization for AI‐based diagnosis of hematoxylin and eosin‐stained pathology images J Boschman, H Farahani, A Darbandsari, P Ahmadvand, ... The Journal of Pathology 256 (1), 15-24, 2022 | 57 | 2022 |
| Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images H Farahani, J Boschman, D Farnell, A Darbandsari, A Zhang, ... Modern Pathology 35 (12), 1983-1990, 2022 | 54 | 2022 |
| Learning oncogenetic networks by reducing to mixed integer linear programming H Shahrabi Farahani, J Lagergren PloS one 8 (6), e65773, 2013 | 51 | 2013 |
| Learning Bounded Tree-width Bayesian Networks using Integer Linear Programming P Parviainen, HS Farahani, J Lagergren Proceedings of the Seventeenth International Conference on Artificial …, 2014 | 49 | 2014 |
| E-scape: interactive visualization of single-cell phylogenetics and cancer evolution MA Smith, CB Nielsen, FC Chan, A McPherson, A Roth, H Farahani, ... Nature Methods 14 (6), 549-550, 2017 | 48 | 2017 |
| Sparse Multi-Modal Graph Transformer With Shared-Context Processing for Representation Learning of Giga-Pixel Images R Nakhli, PA Moghadam, H Mi, H Farahani, A Baras, B Gilks, ... Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2023 | 22 | 2023 |
| Deep-learning based classification distinguishes sarcomatoid malignant mesotheliomas from benign spindle cell mesothelial proliferations JR Naso, AB Levine, H Farahani, LR Chirieac, S Dacic, JL Wright, C Lai, ... Modern Pathology 34 (11), 2028-2035, 2021 | 18 | 2021 |
| Collaborative billiARds: Towards the ultimate gaming experience U Sargaana, HS Farahani, JW Lee, J Ryu, W Woo Entertainment Computing-ICEC 2005: 4th International Conference, Sanda …, 2005 | 14 | 2005 |
| Engineered in-vitro cell line mixtures and robust evaluation of computational methods for clonal decomposition and longitudinal dynamics in cancer H Farahani, CPE de Souza, R Billings, D Yap, K Shumansky, A Wan, ... Scientific Reports 7 (1), 13467, 2017 | 10 | 2017 |
| AI-based histopathology image analysis reveals a distinct subset of endometrial cancers A Darbandsari, H Farahani, M Asadi, M Wiens, D Cochrane, ... Nature Communications 15 (1), 4973, 2024 | 9 | 2024 |
| Machine Learning-driven Histotype Diagnosis of Ovarian Carcinoma: Insights from the OCEAN AI Challenge M Asadi-Aghbolaghi, H Farahani, A Zhang, A Akbari, S Kim, A Chow, ... medRxiv, 2024.04. 19.24306099, 2024 | 7 | 2024 |
| Classification of Epithelial Ovarian Carcinoma Whole-Slide Pathology Images Using Deep Transfer Learning Y Wang, D Farnell, H Farahani, M Nursey, B Tessier-Cloutier, SJM Jones, ... arXiv preprint arXiv:2005.10957, 2020 | 7 | 2020 |
| CO-PILOT: Dynamic Top-Down Point Cloud with Conditional Neighborhood Aggregation for Multi-Gigapixel Histopathology Image Representation R Nakhli, A Zhang, A Mirabadi, K Rich, M Asadi, B Gilks, H Farahani, ... Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2023 | 6 | 2023 |
