متابعة
Ronan M.T. Fleming
Ronan M.T. Fleming
Assoc. Prof., School of Medicine, University of Galway.
بريد إلكتروني تم التحقق منه على universityofgalway.ie - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0‏
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...‏
Nature protocols 6 (9), 1290-1307, 2011‏
16942011
A community-driven global reconstruction of human metabolism‏
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...‏
Nature biotechnology 31 (5), 419-425, 2013‏
12302013
Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices‏
S Halldorsson, E Lucumi, R Gómez-Sjöberg, RMT Fleming‏
Biosensors and Bioelectronics 63, 218–231, 2015‏
12112015
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0‏
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...‏
Nature protocols 14 (3), 639-702, 2019‏
11912019
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota‏
S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ...‏
Nature biotechnology 35 (1), 81-89, 2017‏
7902017
Recon3D enables a three-dimensional view of gene variation in human metabolism‏
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ...‏
Nature biotechnology 36 (3), 272-281, 2018‏
7182018
MEMOTE for standardized genome-scale metabolic model testing‏
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...‏
Nature biotechnology 38 (3), 272-276, 2020‏
469*2020
Derivation of human midbrain-specific organoids from neuroepithelial stem cells‏
AS Monzel, LM Smits, K Hemmer, S Hachi, EL Moreno, T van Wuellen, ...‏
Stem cell reports 8 (5), 1144-1154, 2017‏
4272017
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease‏
A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ...‏
Nucleic acids research 47 (D1), D614-D624, 2019‏
3672019
Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide‏
JD Orth, RMT Fleming, BØ Palsson‏
EcoSal plus 4 (1), 10.1128/ecosalplus. 10.2. 1, 2010‏
3252010
Consistent estimation of Gibbs energy using component contributions‏
E Noor, HS Haraldsdóttir, R Milo, RMT Fleming‏
PLoS computational biology 9 (7), e1003098, 2013‏
3202013
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease‏
A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele‏
Microbiome 7, 1-18, 2019‏
2872019
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut‏
A Heinken, S Sahoo, RMT Fleming, I Thiele‏
Gut microbes 4 (1), 28-40, 2013‏
2542013
SBML Level 3: an extensible format for the exchange and reuse of biological models‏
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...‏
Molecular systems biology 16 (8), e9110, 2020‏
2532020
Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its …‏
I Thiele, N Jamshidi, RMT Fleming, BØ Palsson‏
PLoS computational biology 5 (3), e1000312, 2009‏
2462009
Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome‏
I Thiele, S Sahoo, A Heinken, J Hertel, L Heirendt, MK Aurich, ...‏
Molecular systems biology 16 (5), e8982, 2020‏
205*2020
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine‏
A Heinken, J Hertel, G Acharya, DA Ravcheev, M Nyga, OE Okpala, ...‏
Nature Biotechnology 41 (9), 1320-1331, 2023‏
193*2023
Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture‏
EL Moreno, S Hachi, K Hemmer, SJ Trietsch, AS Baumuratov, ...‏
Lab on a Chip 15 (11), 2419-2428, 2015‏
1752015
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2‏
I Thiele, DR Hyduke, B Steeb, G Fankam, DK Allen, S Bazzani, ...‏
BMC systems biology 5, 1-9, 2011‏
1732011
Integrated analyses of microbiome and longitudinal metabolome data reveal microbial-host interactions on sulfur metabolism in Parkinson’s disease‏
J Hertel, AC Harms, A Heinken, F Baldini, CC Thinnes, E Glaab, ...‏
Cell reports 29 (7), 1767-1777. e8, 2019‏
1502019
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مقالات 1–20