| Genome modeling: from chromatin fibers to genes S Portillo-Ledesma, Z Li, T Schlick Current opinion in structural biology 78, 102506, 2023 | 20 | 2023 |
| TMB library of nucleosome simulations R Sun, Z Li, TC Bishop Journal of chemical information and modeling 59 (10), 4289-4299, 2019 | 15 | 2019 |
| Brownian dynamics simulations of mesoscale chromatin fibers Z Li, S Portillo-Ledesma, T Schlick Biophysical journal 122 (14), 2884-2897, 2023 | 14 | 2023 |
| Some mathematical problems related to the rubik’s snake S Hou, Y Chen, Z Li Journal of Mechanisms and Robotics 13 (1), 014502, 2021 | 9 | 2021 |
| Computational design and analysis of a magic snake Z Li, S Hou, TC Bishop Journal of Mechanisms and Robotics 12 (5), 054501, 2020 | 9 | 2020 |
| Genome dashboards: framework and examples Z Li, R Sun, TC Bishop Biophysical Journal 118 (9), 2077-2085, 2020 | 5 | 2020 |
| Hi-BDiSCO: folding 3D mesoscale genome structures from Hi-C data using brownian dynamics Z Li, T Schlick Nucleic acids research 52 (2), 583-599, 2024 | 4 | 2024 |
| Techniques for and challenges in reconstructing 3D genome structures from 2D chromosome conformation capture data Z Li, S Portillo-Ledesma, T Schlick Current opinion in cell biology 83, 102209, 2023 | 4 | 2023 |
| TMB-iBIOMES: An iBIOMES-Lite database of Nucleosome Trajectories and meta-analysis R Sun, Z Li, TC Bishop | 4 | 2019 |
| Anergy to synergy-the energy fueling the rxcovea framework E Bischof, JAC Broek, CR Cantor, AJ Duits, A Ferro, HW Gao, Z Li, ... International journal for multiscale computational engineering 18 (3), 2020 | 2 | 2020 |
| TMB-iBIOMES: A Database of All Atom Simulation and Analysis for Nucleosomes R Sun, Z Li, TC Bishop Biophysical Journal 116 (3), 563a, 2019 | 1 | 2019 |
| G-Dash: A Genome Dashboard Integrating Modeling and Informatics Z Li, R Sun, TC Bishop BioRxiv, 501874, 2018 | 1 | 2018 |
| Molecular Dynamics Simulation Workflow for Nucleosome Studies R Sun, Z Li, TC Bishop Biophysical Journal 112 (3), 289a, 2017 | 1 | 2017 |
| Compromised 2-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers. B Kable, S Portillo-Ledesma, EY Popova, N Jentink, MT Swulius, Z Li, ... bioRxiv, 2025.01. 16.633430, 2025 | | 2025 |
| Multiscale modeling of chromatin: from fibers to genes to chromosomes T Schlick, Z Li, S Portillo-Ledesma APS March Meeting Abstracts 2023, M08. 006, 2023 | | 2023 |
| Structural Biology S Portillo-Ledesma, Z Li, T Schlick Current Opinion in Structural Biology 78, 102506, 2023 | | 2023 |
| Genome Dashboards: A Framework for Unifying Informatics and Structure Z Li, TC Bishop Biophysical Journal 118 (3), 301a, 2020 | | 2020 |
| A Framework of Multi-Dimensional and Multi-Scale Modeling with Applications Z Li | | 2020 |
| Modeling and informatics of DNA, nucleosomes and chromatin from base pairs to genomes R Sun, Z Li, TC Bishop JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 37, 55-56, 2019 | | 2019 |
| GDash: A Genomics Dashboard Integrating Modeling and Informatics Z Li, R Sun, TC Bishop Biophysical Journal 116 (3), 289a, 2019 | | 2019 |
Tamar SchlickProfessor of Chemistry, Mathematics and Computer Science, New York Universityبريد إلكتروني تم التحقق منه على nyu.edu