متابعة
Jiri Damborsky
Jiri Damborsky
Masaryk University
بريد إلكتروني تم التحقق منه على chemi.muni.cz - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures‏
E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ...‏
Public Library of Science 8 (10), e1002708, 2012‏
12962012
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations‏
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...‏
PLoS computational biology 10 (1), e1003440, 2014‏
8372014
Strategies for stabilization of enzymes in organic solvents‏
V Stepankova, S Bidmanova, T Koudelakova, Z Prokop, R Chaloupkova, ...‏
Acs Catalysis 3 (12), 2823-2836, 2013‏
6742013
CAVER: a new tool to explore routes from protein clefts, pockets and cavities‏
M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský‏
BMC bioinformatics 7, 1-9, 2006‏
6492006
Machine learning in enzyme engineering‏
S Mazurenko, Z Prokop, J Damborsky‏
ACS catalysis 10 (2), 1210-1223, 2019‏
3842019
Bioremediation 3.0: engineering pollutant-removing bacteria in the times of systemic biology‏
P Dvořák, PI Nikel, J Damborský, V de Lorenzo‏
Biotechnology advances 35 (7), 845-866, 2017‏
3582017
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories‏
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...‏
Bioinformatics 34 (20), 3586-3588, 2018‏
3332018
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate‏
M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ...‏
Nature chemical biology 5 (10), 727-733, 2009‏
3232009
Gates of enzymes‏
A Gora, J Brezovsky, J Damborsky‏
Chemical reviews 113 (8), 5871-5923, 2013‏
2932013
Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway‏
P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek, M Sedlackova, ...‏
Microbial cell factories 14, 1-15, 2015‏
2872015
HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information‏
L Sumbalova, J Stourac, T Martinek, D Bednar, J Damborsky‏
Nucleic acids research 46 (W1), W356-W362, 2018‏
2622018
Computational tools for designing and engineering enzymes‏
J Damborsky, J Brezovsky‏
Current opinion in chemical biology 19, 8-16, 2014‏
2592014
HotSpot Wizard: a web server for identification of hot spots in protein engineering‏
A Pavelka, E Chovancova, J Damborsky‏
Nucleic acids research 37 (suppl_2), W376-W383, 2009‏
2462009
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport‏
J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ...‏
Nucleic acids research 47 (W1), W414-W422, 2019‏
2302019
Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26,‏
J Marek, J Vévodová, IK Smatanová, Y Nagata, LA Svensson, J Newman, ...‏
Biochemistry 39 (46), 14082-14086, 2000‏
2082000
PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions‏
J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský‏
PLoS computational biology 12 (5), e1004962, 2016‏
2032016
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel‏
R Chaloupková, J Sýkorová, Z Prokop, A Jesenská, M Monincová, ...‏
Journal of Biological Chemistry 278 (52), 52622-52628, 2003‏
2022003
Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26‏
Y Nagata, K Miyauchi, J Damborsky, K Manova, A Ansorgova, M Takagi‏
Applied and Environmental Microbiology 63 (9), 3707-3710, 1997‏
1961997
Engineering enzyme access tunnels‏
P Kokkonen, D Bednar, G Pinto, Z Prokop, J Damborsky‏
Biotechnology advances 37 (6), 107386, 2019‏
1912019
Haloalkane dehalogenases: biotechnological applications‏
T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ...‏
Biotechnology journal 8 (1), 32-45, 2013‏
1912013
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مقالات 1–20