| Differentially expressed gene networks, biomarkers, long noncoding RNAs, and shared responses with cocaine identified in the midbrains of human opioid abusers MH Saad, M Rumschlag, MH Guerra, CL Savonen, AM Jaster, PD Olson, ... Scientific reports 9 (1), 1534, 2019 | 44 | 2019 |
| Identification of long noncoding RNA s dysregulated in the midbrain of human cocaine abusers MJ Bannon, CL Savonen, H Jia, F Dachet, SD Halter, CJ Schmidt, ... Journal of neurochemistry 135 (1), 50-59, 2015 | 43 | 2015 |
| OpenPBTA: the open pediatric brain tumor atlas JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ... Cell genomics 3 (7), 2023 | 41* | 2023 |
| Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ... Cell reports 34 (13), 2021 | 37 | 2021 |
| Opioid deaths: trends, biomarkers, and potential drug interactions revealed by decision tree analyses MH Saad, CL Savonen, M Rumschlag, SV Todi, CJ Schmidt, MJ Bannon Frontiers in neuroscience 12, 728, 2018 | 17 | 2018 |
| Investigating the potential influence of cause of death and cocaine levels on the differential expression of genes associated with cocaine abuse MJ Bannon, CL Savonen, ZJ Hartley, MM Johnson, CJ Schmidt PloS one 10 (2), e0117580, 2015 | 13 | 2015 |
| A novel application of mixed effects models for reconciling base-pair resolution 5-methylcytosine and 5-hydroxymethylcytosine data in neuroepigenetics J Kochmanski, C Savonen, AI Bernstein Frontiers in Genetics 10, 801, 2019 | 11 | 2019 |
| What's the best chatbot for me? Researchers put LLMs through their paces. EM Humphries, C Wright, AM Hoffman, C Savonen, JT Leek Nature, 2023 | 7 | 2023 |
| Open-source Tools for Training Resources–OTTR C Savonen, C Wright, AM Hoffman, J Muschelli, K Cox, FJ Tan, JT Leek Journal of Statistics and Data Science Education 31 (1), 57-65, 2023 | 6 | 2023 |
| Best practices to evaluate the impact of biomedical research software—metric collection beyond citations A Afiaz, AA Ivanov, J Chamberlin, D Hanauer, CL Savonen, MJ Goldman, ... Bioinformatics 40 (8), btae469, 2024 | 2 | 2024 |
| Motivation, inclusivity, and realism should drive data science education C Savonen, C Wright, A Hoffman, E Humphries, K Cox, F Tan, J Leek F1000Research 12, 1240, 2024 | 1 | 2024 |
| Evaluation of software impact designed for biomedical research: Are we measuring what’s meaningful? A Afiaz, AA Ivanov, J Chamberlin, D Hanauer, CL Savonen, MJ Goldman, ... ArXiv, arXiv: 2306.03255 v1, 2023 | 1 | 2023 |
| OMIC-14. OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS J Shapiro, C Savonen, C Bethell, K Gaonkar, Y Zhu, M Brown, N Duong, ... Neuro-Oncology 23 (Supplement_1), i40-i40, 2021 | 1 | 2021 |
| Reconciling Base-Pair Resolution 5-methylcytosine and 5-hydroxymethylcytosine Data in Neuroepigenetics J Kochmanski, C Savonen, AI Bernstein bioRxiv, 630772, 2019 | 1 | 2019 |
| Relation of Online and Offline Civic Engagement: Investigation of Narcissism as a Moderator C Savonen | 1 | 2013 |
| Increasing cancer-related community-engagement strategies among Historically Black Colleges and Universities and Minority Serving Institutions RD Jeremiah, M Murray, M Standifer, LC Kendall, C Wright, C Savonen, ... CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION 32 (12), 2023 | | 2023 |
| Abstract A047: Increasing cancer-related community-engagement strategies among Historically Black Colleges and Universities and Minority Serving Institutions RD Jeremiah, M Murray, M Standifer, LC Kendall, C Wright, C Savonen, ... Cancer Epidemiology, Biomarkers & Prevention 32 (12_Supplement), A047-A047, 2023 | | 2023 |
| Erratum: Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality (Cell Reports (2021) 34 (13),(S221112472100231X),(10.1016 … MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ... Cell Reports 42 (6), 112600, 2023 | | 2023 |
| OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS J Shapiro, C Savonen, C Bethell, K Gaonkar, Y Zhu, M Brown, N Duong, ... NEURO-ONCOLOGY 23, 40-40, 2021 | | 2021 |
| Single-cell transcriptomic profile reveals macrophage heterogeneity in medulloblastoma and their treatment-dependent recruitment MT Dang, M Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ... bioRxiv, 2020.02. 12.945642, 2020 | | 2020 |
