| Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil J Maire, N Parisot, M Galvao Ferrarini, A Vallier, B Gillet, S Hughes, ... Proceedings of the National Academy of Sciences 117 (32), 19347-19358, 2020 | 65 | 2020 |
| Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration T Clapes, A Polyzou, P Prater, Sagar, A Morales-Hernandez, MG Ferrarini, ... Nature cell biology 23 (7), 704-717, 2021 | 60 | 2021 |
| Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling MG Ferrarini, FM Siqueira, SG Mucha, TL Palama, É Jobard, ... BMC genomics 17, 1-20, 2016 | 54 | 2016 |
| The transposable element-rich genome of the cereal pest Sitophilus oryzae N Parisot, C Vargas-Chávez, C Goubert, P Baa-Puyoulet, S Balmand, ... BMC biology 19, 1-28, 2021 | 46 | 2021 |
| Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis MG Ferrarini, A Lal, R Rebollo, AJ Gruber, A Guarracino, IM Gonzalez, ... Communications biology 4 (1), 590, 2021 | 44 | 2021 |
| Hydrogen peroxide production and myo‐inositol metabolism as important traits for virulence of Mycoplasma hyopneumoniae MG Ferrarini, SG Mucha, D Parrot, G Meiffrein, JF Ruggiero Bachega, ... Molecular microbiology 108 (6), 683-696, 2018 | 35 | 2018 |
| Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system MG Ferrarini, E Dell’Aglio, A Vallier, S Balmand, C Vincent-Monégat, ... Microbiome 10 (1), 156, 2022 | 24 | 2022 |
| MOOMIN–Mathematical explOration of’Omics data on a MetabolIc Network T Pusa, MG Ferrarini, R Andrade, A Mary, A Marchetti-Spaccamela, ... Bioinformatics 36 (2), 514-523, 2020 | 19 | 2020 |
| Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells SG Mucha, MG Ferrarini, C Moraga, A Di Genova, L Guyon, F Tardy, ... Scientific Reports 10 (1), 13707, 2020 | 16 | 2020 |
| Inter-strain epigenomic profiling reveals a candidate IAP master copy in C3H mice R Rebollo, M Galvão-Ferrarini, L Gagnier, Y Zhang, A Ferraj, CR Beck, ... Viruses 12 (7), 783, 2020 | 12 | 2020 |
| Trypanosoma cruzi XRNA granules colocalise with distinct mRNP granules at the nuclear periphery JF Costa, MG Ferrarini, SC Nardelli, S Goldenberg, AR Ávila, FB Holetz Memórias do Instituto Oswaldo Cruz 113 (6), e170531, 2018 | 12 | 2018 |
| A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog M Borderes, C Gasc, E Prestat, M Galvão Ferrarini, S Vinga, L Boucinha, ... NAR genomics and bioinformatics 3 (1), lqab009, 2021 | 11 | 2021 |
| Modulation of Klebsiella pneumoniae Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment ACR Lucena, MG Ferrarini, WK de Oliveira, BH Marcon, LG Morello, ... Biomedicines 11 (6), 1515, 2023 | 9 | 2023 |
| Intestinal GCN2 controls Drosophila systemic growth in response to Lactiplantibacillus plantarum symbiotic cues encoded by r/tRNA operons T Grenier, J Consuegra, MG Ferrarini, H Akherraz, L Bai, Y Dusabyinema, ... Elife 12, e76584, 2023 | 7 | 2023 |
| Dichloroacetate and pyruvate metabolism: pyruvate dehydrogenase kinases as targets worth investigating for effective therapy of toxoplasmosis MG Ferrarini, LM Nisimura, RMBM Girard, MB Alencar, MSI Fragoso, ... Msphere 6 (1), 10.1128/msphere. 01002-20, 2021 | 7 | 2021 |
| BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data C Moraga, E Sanchez, MG Ferrarini, RA Gutierrez, EA Vidal, MF Sagot GigaScience 11, giac093, 2022 | 6 | 2022 |
| Phenotypic and transcriptomic responses to stress differ according to population geography in an invasive species P Marin, A Jaquet, J Picarle, M Fablet, V Merel, ML Delignette-Muller, ... Genome Biology and Evolution 13 (9), evab208, 2021 | 6 | 2021 |
| Resistome analysis of bloodstream infection bacterial genomes reveals a specific set of proteins involved in antibiotic resistance and drug efflux WK Oliveira, M Ferrarini, LG Morello, H Faoro NAR Genomics and Bioinformatics 2 (3), lqaa055, 2020 | 6 | 2020 |
| MicroRNA target identification: revisiting accessibility and seed anchoring N Homberg, M Galvão Ferrarini, C Gaspin, MF Sagot Genes 14 (3), 664, 2023 | 5 | 2023 |
| Investigating the Human Host—ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox A Lal, M Galvao Ferrarini, AJ Gruber Viruses 14 (7), 1436, 2022 | 5 | 2022 |
