| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1230 | 2013 |
| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1193 | 2019 |
| The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019 | 367 | 2019 |
| Consistent estimation of Gibbs energy using component contributions E Noor, HS Haraldsdóttir, R Milo, RMT Fleming PLoS computational biology 9 (7), e1003098, 2013 | 320 | 2013 |
| CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models HS Haraldsdóttir, B Cousins, I Thiele, RMT Fleming, S Vempala Bioinformatics 33 (11), 1741-1743, 2017 | 105 | 2017 |
| Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load N Tepper, E Noor, D Amador-Noguez, HS Haraldsdóttir, R Milo, ... PloS one 8 (9), e75370, 2013 | 94 | 2013 |
| Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction HS Haraldsdóttir, I Thiele, RMT Fleming Biophysical journal 102 (8), 1703-1711, 2012 | 65 | 2012 |
| Modeling the effects of commonly used drugs on human metabolism S Sahoo, HS Haraldsdóttir, RMT Fleming, I Thiele The FEBS journal 282 (2), 297-317, 2015 | 44 | 2015 |
| Identification of conserved moieties in metabolic networks by graph theoretical analysis of atom transition networks HS Haraldsdóttir, RMT Fleming PLOS Computational Biology 12 (11), e1004999, 2016 | 40 | 2016 |
| Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D GA Preciat Gonzalez, LRP El Assal, A Noronha, I Thiele, HS Haraldsdóttir, ... Journal of cheminformatics 9, 1-15, 2017 | 36 | 2017 |
| Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2 HS Haraldsdóttir, I Thiele, RMT Fleming Journal of cheminformatics 6, 1-12, 2014 | 28 | 2014 |
| Structural conserved moiety splitting of a stoichiometric matrix S Ghaderi, HS Haraldsdóttir, M Ahookhosh, S Arreckx, RMT Fleming Journal of Theoretical Biology 499, 110276, 2020 | 7 | 2020 |
| Mechanistic model-driven exometabolomic characterisation of human dopaminergic neuronal metabolism G Preciat, EL Moreno, AB Wegrzyn, CCW Willacey, J Modamio, ... bioRxiv, 2021.06. 30.450562, 2021 | 6 | 2021 |
| Cardinality optimization in constraint-based modelling: application to human metabolism RMT Fleming, HS Haraldsdottir, LH Minh, PT Vuong, T Hankemeier, ... Bioinformatics 39 (9), btad450, 2023 | 4 | 2023 |
| Conserved moiety fluxomics RMT Fleming, HS Haraldsdottir, G Preciat, L Huang, I Thiele, AC Harms, ... bioRxiv, 2024.11. 21.624666, 2024 | | 2024 |
| Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D G Preciat, LRP El Assal, A Noronha, I Thiele, HS Haraldsdóttir, ... | | |
| Cardinality optimisation in constraint-based modelling of metabolism HM Le, HS Haraldsdottir, TV Phan, I Thiele, RMT Fleming | | |
| Comparative evaluation of atom mapping algorithms for metabolic reactions GP Gonzalez, L El Assal, I Thiele, H Haraldsdóttir, RMT Fleming | | |
| Thermodynamically constraining a genome-scale metabolic model with von Bertalan-ffy 2.0 L El Assal, HS Haraldsdóttir, RMT Fleming | | |
| Mat á ummyndaðri Gibbs-orku efnaskiptahvarfa til að skorða efnaskiptanet varmafræðilega HS Haraldsdóttir | | |
