| PHENIX: a comprehensive Python-based system for macromolecular structure solution PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ... Biological crystallography 66 (2), 213-221, 2010 | 24835 | 2010 |
| MolProbity: all-atom structure validation for macromolecular crystallography VB Chen, WB Arendall, JJ Headd, DA Keedy, RM Immormino, GJ Kapral, ... Biological crystallography 66 (1), 12-21, 2010 | 14800 | 2010 |
| Towards automated crystallographic structure refinement with phenix. refine PV Afonine, RW Grosse-Kunstleve, N Echols, JJ Headd, NW Moriarty, ... Biological crystallography 68 (4), 352-367, 2012 | 5556 | 2012 |
| MolProbity: more and better reference data for improved all‐atom structure validation CJ Williams, JJ Headd, NW Moriarty, MG Prisant, LL Videau, LN Deis, ... Protein Science 27 (1), 293-315, 2018 | 3630 | 2018 |
| The Phenix software for automated determination of macromolecular structures PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ... Methods 55 (1), 94-106, 2011 | 908 | 2011 |
| RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution) JS Richardson, B Schneider, LW Murray, GJ Kapral, RM Immormino, ... Rna 14 (3), 465-481, 2008 | 321 | 2008 |
| Use of knowledge-based restraints in phenix. refine to improve macromolecular refinement at low resolution JJ Headd, N Echols, PV Afonine, RW Grosse-Kunstleve, VB Chen, ... Biological Crystallography 68 (4), 381-390, 2012 | 275 | 2012 |
| Improved low-resolution crystallographic refinement with Phenix and Rosetta F DiMaio, N Echols, JJ Headd, TC Terwilliger, PD Adams, D Baker Nature methods 10 (11), 1102-1104, 2013 | 204 | 2013 |
| Graphical tools for macromolecular crystallography in PHENIX N Echols, RW Grosse-Kunstleve, PV Afonine, G Bunkóczi, VB Chen, ... Applied Crystallography 45 (3), 581-586, 2012 | 177 | 2012 |
| New tool: phenix. real_space_refine PV Afonine, JJ Headd, TC Terwilliger, PD Adams Computational crystallography newsletter 4 (2), 43-44, 2013 | 153 | 2013 |
| phenix. model_vs_data: A high-level tool for the calculation of crystallographic model and data statistics PV Afonine, RW Grosse-Kunstleve, VB Chen, JJ Headd, NW Moriarty, ... Applied Crystallography 43 (4), 669-676, 2010 | 107 | 2010 |
| The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models DA Keedy, CJ Williams, JJ Headd, WB Arendall III, VB Chen, GJ Kapral, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 29-49, 2009 | 98 | 2009 |
| Acta Crystallogr. D Biol. Crystallogr. PD Adams | 79 | 2010 |
| Co-crystal structures of PKG Iβ (92–227) with cGMP and cAMP reveal the molecular details of cyclic-nucleotide binding JJ Kim, DE Casteel, G Huang, TH Kwon, RK Ren, P Zwart, JJ Headd, ... PloS one 6 (4), e18413, 2011 | 77 | 2011 |
| Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study D Fusco, JJ Headd, A De Simone, J Wang, P Charbonneau Soft matter 10 (2), 290-302, 2014 | 65 | 2014 |
| Automating crystallographic structure solution and refinement of protein–ligand complexes N Echols, NW Moriarty, HE Klei, PV Afonine, G Bunkóczi, JJ Headd, ... Biological Crystallography 70 (1), 144-154, 2014 | 53 | 2014 |
| Protein− Protein Interfaces: Properties, Preferences, and Projections JJ Headd, YEA Ban, P Brown, H Edelsbrunner, M Vaidya, J Rudolph Journal of Proteome Research 6 (7), 2576-2586, 2007 | 53 | 2007 |
| Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place JJ Headd, RM Immormino, DA Keedy, P Emsley, DC Richardson, ... Journal of structural and functional genomics 10, 83-93, 2009 | 50 | 2009 |
| 737 Richardson JS, Richardson DC. 2010. MolProbity: all-atom structure validation for 738 macromolecular crystallography VB Chen, WB Arendall 3rd, JJ Headd, DA Keedy, RM Immormino, ... Acta Crystallogr D Biol Crystallogr 66, 12-21, 0 | 47* | |
| Identification of the linker-SH2 domain of STAT as the origin of the SH2 domain using two-dimensional structural alignment Q Gao, J Hua, R Kimura, JJ Headd, X Fu, YE Chin Molecular & Cellular Proteomics 3 (7), 704-714, 2004 | 44 | 2004 |