| Intronic microRNA precursors that bypass Drosha processing JG Ruby, CH Jan, DP Bartel Nature 448 (7149), 83-86, 2007 | 2204 | 2007 |
| Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans JG Ruby, C Jan, C Player, MJ Axtell, W Lee, C Nusbaum, H Ge, DP Bartel Cell 127 (6), 1193-1207, 2006 | 1159 | 2006 |
| Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs JE Babiarz, JG Ruby, Y Wang, DP Bartel, R Blelloch Genes & development 22 (20), 2773-2785, 2008 | 1157 | 2008 |
| Mammalian microRNAs: experimental evaluation of novel and previously annotated genes HR Chiang, LW Schoenfeld, JG Ruby, VC Auyeung, N Spies, D Baek, ... Genes & development 24 (10), 992-1009, 2010 | 994 | 2010 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... GigaScience 2 (1), 2047-217X-2-10, 2013 | 809 | 2013 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219-232, 2007 | 722 | 2007 |
| Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs JG Ruby, A Stark, WK Johnston, M Kellis, DP Bartel, EC Lai Genome research 17 (12), 1850-1864, 2007 | 701 | 2007 |
| PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans PJ Batista, JG Ruby, JM Claycomb, R Chiang, N Fahlgren, KD Kasschau, ... Molecular cell 31 (1), 67-78, 2008 | 661 | 2008 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 633 | 2011 |
| Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia C Runckel, ML Flenniken, JC Engel, JG Ruby, D Ganem, R Andino, ... PloS one 6 (6), e20656, 2011 | 563 | 2011 |
| Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs CH Jan, RC Friedman, JG Ruby, DP Bartel Nature 469 (7328), 97-101, 2011 | 551 | 2011 |
| The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs K Okamura, WJ Chung, JG Ruby, H Guo, DP Bartel, EC Lai Nature 453 (7196), 803-806, 2008 | 521 | 2008 |
| Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution DP Melters, KR Bradnam, HA Young, N Telis, MR May, JG Ruby, R Sebra, ... Genome biology 14, 1-20, 2013 | 518 | 2013 |
| PRICE: software for the targeted assembly of components of (Meta) genomic sequence data JG Ruby, P Bellare, JL DeRisi G3: Genes, Genomes, Genetics 3 (5), 865-880, 2013 | 326 | 2013 |
| Naked mole-rat mortality rates defy Gompertzian laws by not increasing with age JG Ruby, M Smith, R Buffenstein elife 7, e31157, 2018 | 274 | 2018 |
| A novel rhabdovirus associated with acute hemorrhagic fever in central Africa G Grard, JN Fair, D Lee, E Slikas, I Steffen, JJ Muyembe, T Sittler, ... Public Library of Science 8 (9), e1002924, 2012 | 253 | 2012 |
| Estimates of the heritability of human longevity are substantially inflated due to assortative mating JG Ruby, KM Wright, KA Rand, A Kermany, K Noto, D Curtis, N Varner, ... Genetics 210 (3), 1109-1124, 2018 | 225 | 2018 |
| Merochlorins A–D, cyclic meroterpenoid antibiotics biosynthesized in divergent pathways with vanadium-dependent chloroperoxidases L Kaysser, P Bernhardt, SJ Nam, S Loesgen, JG Ruby, P Skewes-Cox, ... Journal of the American Chemical Society 134 (29), 11988-11991, 2012 | 219 | 2012 |
| Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents … MD Stenglein, C Sanders, AL Kistler, JG Ruby, JY Franco, DR Reavill, ... MBio 3 (4), 10.1128/mbio. 00180-12, 2012 | 212 | 2012 |
| Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma ST Arron, JG Ruby, E Dybbro, D Ganem, JL DeRisi Journal of Investigative Dermatology 131 (8), 1745-1753, 2011 | 176 | 2011 |
