| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1140 | 2013 |
| HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets SJ De Vries, ADJ Van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ... Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007 | 680 | 2007 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 449 | 2016 |
| Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis Y Zhang, ADJ Van Dijk, A Scaffidi, GR Flematti, M Hofmann, ... Nature chemical biology 10 (12), 1028-1033, 2014 | 423 | 2014 |
| SEPALLATA3: the'glue'for MADS box transcription factor complex formation RGH Immink, IAN Tonaco, S de Folter, A Shchennikova, ADJ van Dijk, ... Genome biology 10, 1-16, 2009 | 326 | 2009 |
| Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically S Danisman, F Van der Wal, S Dhondt, R Waites, S de Folter, A Bimbo, ... Plant physiology 159 (4), 1511-1523, 2012 | 325 | 2012 |
| Characterization of SOC1’s central role in flowering by the identification of its upstream and downstream regulators RGH Immink, D Posé, S Ferrario, F Ott, K Kaufmann, FL Valentim, ... Plant physiology 160 (1), 433-449, 2012 | 243 | 2012 |
| Data‐driven docking for the study of biomolecular complexes ADJ Van Dijk, R Boelens, AMJJ Bonvin The FEBS journal 272 (2), 293-312, 2005 | 220 | 2005 |
| Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility M van Dijk, ADJ van Dijk, V Hsu, R Boelens, AMJJ Bonvin Nucleic acids research 34 (11), 3317-3325, 2006 | 214 | 2006 |
| WHISCY: what information does surface conservation yield? Application to data‐driven docking SJ de Vries, ADJ van Dijk, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics 63 (3), 479-489, 2006 | 182 | 2006 |
| Solvated docking: introducing water into the modelling of biomolecular complexes ADJ Van Dijk, AMJJ Bonvin Bioinformatics 22 (19), 2340-2347, 2006 | 178 | 2006 |
| Machine learning in plant science and plant breeding ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder Iscience 24 (1), 2021 | 175 | 2021 |
| Analysis of functional redundancies within the Arabidopsis TCP transcription factor family S Danisman, ADJ van Dijk, A Bimbo, F van der Wal, L Hennig, S de Folter, ... Journal of experimental botany 64 (18), 5673-5685, 2013 | 149 | 2013 |
| Towards recommendations for metadata and data handling in plant phenotyping P Krajewski, D Chen, H Ćwiek, ADJ van Dijk, F Fiorani, P Kersey, ... Journal of Experimental Botany 66 (18), 5417-5427, 2015 | 147 | 2015 |
| Valencene synthase from the heartwood of Nootka cypress (Callitropsis nootkatensis) for biotechnological production of valencene J Beekwilder, A van Houwelingen, K Cankar, ADJ van Dijk, RM de Jong, ... Plant biotechnology journal 12 (2), 174-182, 2014 | 140 | 2014 |
| Bayesian Markov Random Field analysis for protein function prediction based on network data YAI Kourmpetis, ADJ Van Dijk, MCAM Bink, RCHJ van Ham, ... PloS one 5 (2), e9293, 2010 | 125 | 2010 |
| Data‐driven docking: HADDOCK's adventures in CAPRI ADJ Van Dijk, SJ De Vries, C Dominguez, H Chen, HX Zhou, A Bonvin Proteins: Structure, Function, and Bioinformatics 60 (2), 232-238, 2005 | 111 | 2005 |
| The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history A Pajoro, S Biewers, E Dougali, F Leal Valentim, MA Mendes, A Porri, ... Journal of Experimental Botany 65 (17), 4731-4745, 2014 | 110 | 2014 |
| Cross-family transcription factor interactions: an additional layer of gene regulation M Bemer, ADJ van Dijk, RGH Immink, GC Angenent Trends in plant science 22 (1), 66-80, 2017 | 104 | 2017 |
| Various strategies of using residual dipolar couplings in NMR‐driven protein docking: Application to Lys48‐linked di‐ubiquitin and validation against 15N … ADJ van Dijk, D Fushman, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics 60 (3), 367-381, 2005 | 102 | 2005 |
