| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 1072 | 2020 |
| A clinically applicable approach to continuous prediction of future acute kidney injury N Tomašev, X Glorot, JW Rae, M Zielinski, H Askham, A Saraiva, ... Nature 572 (7767), 116-119, 2019 | 976 | 2019 |
| Bioactivity-based molecular networking for the discovery of drug leads in natural product bioassay-guided fractionation LF Nothias, M Nothias-Esposito, R Da Silva, M Wang, I Protsyuk, Z Zhang, ... Journal of natural products 81 (4), 758-767, 2018 | 366 | 2018 |
| Three-dimensional microbiome and metabolome cartography of a diseased human lung N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ... Cell host & microbe 22 (5), 705-716. e4, 2017 | 120 | 2017 |
| 3D molecular cartography using LC–MS facilitated by Optimus and'ili software I Protsyuk, AV Melnik, LF Nothias, L Rappez, P Phapale, AA Aksenov, ... Nature protocols 13 (1), 134-154, 2018 | 108 | 2018 |
| Use of deep learning to develop continuous-risk models for adverse event prediction from electronic health records N Tomašev, N Harris, S Baur, A Mottram, X Glorot, JW Rae, M Zielinski, ... Nature Protocols 16 (6), 2765-2787, 2021 | 92 | 2021 |
| Meta-mass shift chemical profiling of metabolomes from coral reefs AC Hartmann, D Petras, RA Quinn, I Protsyuk, FI Archer, E Ransome, ... Proceedings of the National Academy of Sciences 114 (44), 11685-11690, 2017 | 92 | 2017 |
| Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ... Analytical chemistry 89 (14), 7549-7559, 2017 | 90 | 2017 |
| Mass spectrometry-based visualization of molecules associated with human habitats D Petras, LF Nothias, RA Quinn, T Alexandrov, N Bandeira, A Bouslimani, ... Analytical chemistry 88 (22), 10775-10784, 2016 | 54 | 2016 |
| Creating a 3D microbial and chemical snapshot of a human habitat CA Kapono, JT Morton, A Bouslimani, AV Melnik, K Orlinsky, TL Knaan, ... Scientific Reports 8 (1), 3669, 2018 | 47 | 2018 |
| Concept-based model explanations for electronic health records D Mincu, E Loreaux, S Hou, S Baur, I Protsyuk, M Seneviratne, A Mottram, ... Proceedings of the Conference on Health, Inference, and Learning, 36-46, 2021 | 29 | 2021 |
| Molecular and microbial microenvironments in chronically diseased lungs associated with cystic fibrosis AV Melnik, Y Vázquez-Baeza, AA Aksenov, E Hyde, AC McAvoy, M Wang, ... Msystems 4 (5), 10.1128/msystems. 00375-19, 2019 | 24 | 2019 |
| Multitask prediction of organ dysfunction in the intensive care unit using sequential subnetwork routing S Roy, D Mincu, E Loreaux, A Mottram, I Protsyuk, N Harris, Y Xue, ... Journal of the American Medical Informatics Association 28 (9), 1936-1946, 2021 | 19 | 2021 |
| Shared bioinformatics databases within the Unipro UGENE platform IV Protsyuk, GA Grekhov, AV Tiunov, MY Fursov Journal of Integrative Bioinformatics (JIB) 12 (1), 24-34, 2015 | 10 | 2015 |
| Program complex SNP-MED for analysis of single-nucleotide polymorphism (SNP) effects on the function of genes associated with socially significant diseases NL Podkolodnyy, DA Afonnikov, YY Vaskin, LO Bryzgalov, VA Ivanisenko, ... Russian Journal of Genetics: Applied Research 4, 159-167, 2014 | 9 | 2014 |
| Boosting the interpretability of clinical risk scores with intervention predictions E Loreaux, K Yu, J Kemp, M Seneviratne, C Chen, S Roy, I Protsyuk, ... arXiv preprint arXiv:2207.02941, 2022 | 2 | 2022 |
| Prediction of future adverse health events using neural networks by pre-processing input sequences to include presence features N Tomasev, X Glorot, JW Rae, M Zielinski, A Mottram, H Askham, ... US Patent 11,302,446, 2022 | | 2022 |
| Concept-based model explanations for Electronic Health Records S Baur, S Hou, E Loreaux, D Mincu, A Mottram, I Protsyuk, N Tomasev, ... arXiv e-prints, arXiv: 2012.02308, 2020 | | 2020 |
| Metabolomic diversity and diversification on coral reefs AC Hartmann, EJ Ransome, D Petras, D Cahyani, A Wahyu, R Quinn, ... 2018 Ocean Sciences Meeting, 2018 | | 2018 |
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