| Hybrid cloud and cluster computing paradigms for life science applications J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ... BMC bioinformatics 11, 1-6, 2010 | 102 | 2010 |
| Big data, simulations and HPC convergence G Fox, J Qiu, S Jha, S Ekanayake, S Kamburugamuve Big Data Benchmarking: 6th International Workshop, WBDB 2015, Toronto, ON …, 2016 | 79 | 2016 |
| Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink S Kamburugamuve, P Wickramasinghe, S Ekanayake, GC Fox The International Journal of High Performance Computing Applications 32 (1 …, 2018 | 56 | 2018 |
| Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ... Applied and Environmental Microbiology 82 (16), 4921-4930, 2016 | 42 | 2016 |
| Distributed many-to-many protein sequence alignment using sparse matrices O Selvitopi, S Ekanayake, G Guidi, GA Pavlopoulos, A Azad, A Buluç SC20: International Conference for High Performance Computing, Networking …, 2020 | 36 | 2020 |
| Towards high performance processing of streaming data in large data centers S Kamburugamuve, S Ekanayake, M Pathirage, G Fox 2016 IEEE International Parallel and Distributed Processing Symposium …, 2016 | 33 | 2016 |
| Generative modeling of human behavior and social interactions using abductive analysis Y Ren, V Cedeno-Mieles, Z Hu, X Deng, A Adiga, C Barrett, S Ekanayake, ... 2018 IEEE/ACM International Conference on Advances in Social Networks …, 2018 | 31 | 2018 |
| Spidal java: High performance data analytics with java and mpi on large multicore hpc clusters S Ekanayake, S Kamburugamuve, GC Fox Proceedings of the 24th High Performance Computing Symposium, 1-8, 2016 | 30 | 2016 |
| DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 30 | 2012 |
| The parallelism motifs of genomic data analysis K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ... Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020 | 25 | 2020 |
| Data intensive computing for bioinformatics J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ... Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012 | 25 | 2012 |
| Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework V Cedeno-Mieles, Z Hu, Y Ren, X Deng, A Adiga, C Barrett, N Contractor, ... Social Network Analysis and Mining 10, 1-43, 2020 | 23 | 2020 |
| Java thread and process performance for parallel machine learning on multicore hpc clusters S Ekanayake, S Kamburugamuve, P Wickramasinghe, GC Fox 2016 IEEE international conference on big data (Big Data), 347-354, 2016 | 23 | 2016 |
| Performance of windows multicore systems on threading and mpi J Qiu, S Beason, SH Bae, S Ekanayake, G Fox 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid …, 2010 | 23 | 2010 |
| Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014 | 22 | 2014 |
| The matrix: An agent-based modeling framework for data intensive simulations P Bhattacharya, S Ekanayake, CJ Kuhlman, C Lebiere, D Morrison, ... Proceedings of the 18th International Conference on Autonomous Agents and …, 2019 | 17 | 2019 |
| Towards a comprehensive set of big data benchmarks GC Fox, S Jha, J Qiu, S Ekanayake, A Luckow Big Data and High Performance Computing, 47-66, 2015 | 14 | 2015 |
| Visualizing the protein sequence universe L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ... Proceedings of the 3rd international workshop on Emerging computational …, 2012 | 14 | 2012 |
| Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox BMC bioinformatics 13, 1-6, 2012 | 12 | 2012 |
| Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games V Cedeno-Mieles, Z Hu, X Deng, Y Ren, A Adiga, C Barrett, S Ekanayake, ... Proceedings of the 2019 IEEE/ACM International Conference on Advances in …, 2019 | 9 | 2019 |
Geoffrey FoxProfessor of Computer Science, University of Virginia, Biocomplexity Instituteبريد إلكتروني تم التحقق منه على virginia.edu
