Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters MA Jonikas, RJ Radmer, A Laederach, R Das, S Pearlman, D Herschlag, ... Rna 15 (2), 189-199, 2009 | 378 | 2009 |
Structural inference of native and partially folded RNA by high-throughput contact mapping R Das, M Kudaravalli, M Jonikas, A Laederach, R Fong, JP Schwans, ... Proceedings of the National Academy of Sciences 105 (11), 4144-4149, 2008 | 103 | 2008 |
Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding A Laederach, I Shcherbakova, MA Jonikas, RB Altman, M Brenowitz Proceedings of the National Academy of Sciences 104 (17), 7045-7050, 2007 | 80 | 2007 |
Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models MA Jonikas, RJ Radmer, RB Altman Bioinformatics 25 (24), 3259-3266, 2009 | 66 | 2009 |
Influence of three-dimensional scaffold on the expression of osteogenic differentiation markers by human dermal fibroblasts CK Hee, MA Jonikas, SB Nicoll Biomaterials 27 (6), 875-884, 2006 | 65 | 2006 |
Surveillance of medication use: early identification of poor adherence MA Jonikas, KD Mandl Journal of the American Medical Informatics Association 19 (4), 649-654, 2012 | 26 | 2012 |
Scalable decision support at the point of care: a substitutable electronic health record app for monitoring medication adherence W Bosl, J Mandel, M Jonikas, RB Ramoni, IS Kohane, KD Mandl Interactive journal of medical research 2 (2), e2480, 2013 | 20 | 2013 |
Early detection of poor adherers to statins: applying individualized surveillance to pay for performance AJ Zimolzak, CM Spettell, J Fernandes, VA Fusaro, NP Palmer, S Saria, ... PLoS One 8 (11), e79611, 2013 | 14 | 2013 |
Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns C Chen, S Mitra, M Jonikas, J Martin, M Brenowitz, A Laederach Biophysical journal 104 (6), 1326-1337, 2013 | 14 | 2013 |
Rhiju Das, Samuel Pearlman, Daniel Herschlag, and Russ B. Altman. Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters MA Jonikas, RJ Radmer, A Laederach Rna 15, 189-199, 2009 | 12 | 2009 |
Methods for building and refining 3D models of RNA SC Flores, M Jonikas, C Bruns, JP Ku, J Schmidt, RB Altman RNA 3D Structure Analysis and Prediction, 143-166, 2012 | 6 | 2012 |
Three-dimensional constrained capsule placement for coarse grained tertiary rna structure prediction J Egeblad, L Guibas, M Jonikas, A Laederach Heuristics for Multidimensional Packing Problems, 207, 2008 | 1 | 2008 |
Knowledge-based modeling of RNA three-dimensional structure MA Jonikas Stanford University, 2009 | | 2009 |
Distinct contribution of electrostatics, initial conformational ensemble and macromolecular stability in RNA folding M Brenowitz, A Laederach, I Shcherbakova, M Jonikas, RB Altman ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 233, 2007 | | 2007 |