Fabio Cumbo

Получаване на мой собствен потребителски профил

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	Всички	От 2020
Позовавания	4466	4193
h-индекс	18	18
i10-индекс	26	25

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Публичен достъп

Преглед на всички

29 статии

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Въз основа на изисквания при финансирането

Съавтори

Nicola SegataDepartment CIBIO, University of TrentoПотвърден имейл адрес: unitn.it
Paolo ManghiResearcher, Edmund Mach Foundation, Unit of Computational BiologyПотвърден имейл адрес: unitn.it
Francesco AsnicarDepartment CIBIO, University of TrentoПотвърден имейл адрес: unitn.it
Emanuel WeitschekDepartment of Engineering, Uninettuno UniversityПотвърден имейл адрес: iasi.cnr.it
Edoardo PasolliDepartment of Agricultural Sciences, University of Naples Federico IIПотвърден имейл адрес: unina.it
Francesco BeghiniYale UniversityПотвърден имейл адрес: yale.edu
Serena ManaraDepartment CIBIO, University of TrentoПотвърден имейл адрес: unitn.it
Mireia Valles-ColomerMELIS-UPFПотвърден имейл адрес: upf.edu
Marco MasseroliPolitecnico di MilanoПотвърден имейл адрес: polimi.it
Giulia FisconDepartment of Computer, Control, and Management Engineering "Antonio Ruberti" Sapienza UniversityПотвърден имейл адрес: diag.uniroma1.it
Stefano CeriProfessor, Politecnico di MilanoПотвърден имейл адрес: polimi.it
paola bertolazziIsitituto di Analisi dei Sistemi e Informatica .A RubertiПотвърден имейл адрес: iasi.cnr.it
Giovanni FeliciCNR-IASIПотвърден имейл адрес: iasi.cnr.it
Luisa Di PaolaAssociate Professor Università Campus BiomedicoПотвърден имейл адрес: unicampus.it
Alessandro GiulianiIstituto Superiore di SanitàПотвърден имейл адрес: iss.it
Marzia Angela CremonaDepartment of Operations and Decision Systems, Université LavalПотвърден имейл адрес: fsa.ulaval.ca
Francesca ChiaromonteProfessor of Statistics, Pennsylvania State University, Sant'Anna School of Advanced StudiesПотвърден имейл адрес: psu.edu
Marco S. NobileAssociate Professor, Ca' Foscari University of VeniceПотвърден имейл адрес: unive.it
Paolo CazzanigaAssociate Professor, University of BergamoПотвърден имейл адрес: unibg.it
Chiara DamianiDepartment of Biotechnology and BiosciencesПотвърден имейл адрес: unimib.it

Следене

Fabio Cumbo

Center for Computational Life Sciences, Lerner Research Institute, Cleveland Clinic

Потвърден имейл адрес: ccf.org - Начална страница

Algorithms Bioinformatics Machine Learning Metagenomics Vector Symbolic Architectures


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475, 2018	1270	2018
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020	564	2020
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023	551	2023
Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ... Nature medicine 28 (2), 315-324, 2022	411	2022
The person-to-person transmission landscape of the gut and oral microbiomes M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ... Nature 614 (7946), 125-135, 2023	287	2023
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome E Pasolli, F De Filippis, IE Mauriello, F Cumbo, AM Walsh, J Leech, ... Nature communications 11 (1), 2610, 2020	286	2020
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ... Nature Medicine 28 (9), 1913-1923, 2022	202	2022
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity D Wylensek, TCA Hitch, T Riedel, A Afrizal, N Kumar, E Wortmann, T Liu, ... Nature communications 11 (1), 6389, 2020	155	2020
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ... Genome biology 22 (1), 209, 2021	113	2021
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update Nucleic acids research 52 (W1), W83-W94, 2024	88	2024
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ... Genome biology 20, 1-16, 2019	74	2019
Population-level impacts of antibiotic usage on the human gut microbiome K Lee, S Raguideau, K Sirén, F Asnicar, F Cumbo, F Hildebrand, ... Nature Communications 14 (1), 1191, 2023	59	2023
Classification of large DNA methylation datasets for identifying cancer drivers F Celli, F Cumbo, E Weitschek Big data research 13, 21-28, 2018	53	2018
Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4 A Blanco-Miguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Biorxiv, 2022.08. 22.504593, 2022	52	2022
GIANT: a cytoscape plugin for modular networks F Cumbo, P Paci, D Santoni, L Di Paola, A Giuliani PLoS One 9 (10), e105001, 2014	49	2014
TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas F Cumbo, G Fiscon, S Ceri, M Masseroli, E Weitschek BMC bioinformatics 18, 1-9, 2017	42	2017
Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines M Tomasi, M Dalsass, F Beghini, I Zanella, E Caproni, L Fantappiè, ... Vaccines 9 (11), 1356, 2021	21	2021
Ten quick tips for avoiding pitfalls in multi-omics data integration analyses D Chicco, F Cumbo, C Angione PLoS computational biology 19 (7), e1011224, 2023	19	2023
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice P Manghi, A Blanco-Míguez, S Manara, A NabiNejad, F Cumbo, F Beghini, ... Cell Reports 42 (5), 2023	17	2023
A perspective on protein structure prediction using quantum computers H Doga, B Raubenolt, F Cumbo, J Joshi, FP DiFilippo, J Qin, ... Journal of Chemical Theory and Computation 20 (9), 3359-3378, 2024	16	2024

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