| The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation JA Birchler, H Yang The Plant Cell 34 (7), 2466-2474, 2022 | 161 | 2022 |
| DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng BMC bioinformatics 22, 1-18, 2021 | 77 | 2021 |
| The wheat transcription factor Ta GAM yb recruits histone acetyltransferase and activates the expression of a high‐molecular‐weight glutenin subunit gene W Guo, H Yang, Y Liu, Y Gao, Z Ni, H Peng, M Xin, Z Hu, Q Sun, Y Yao The Plant Journal 84 (2), 347-359, 2015 | 62 | 2015 |
| Genome-wide mapping of targets of maize histone deacetylase HDA101 reveals its function and regulatory mechanism during seed development H Yang, X Liu, M Xin, J Du, Z Hu, HR Peng, V Rossi, Q Sun, Z Ni, Y Yao The Plant Cell 28 (3), 629-645, 2016 | 58 | 2016 |
| Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution N Blavet, H Yang, H Su, P Solanský, RN Douglas, M Karafiátová, ... Proceedings of the National Academy of Sciences 118 (23), e2104254118, 2021 | 55 | 2021 |
| Genomic imbalance determines positive and negative modulation of gene expression in diploid maize X Shi, H Yang, C Chen, J Hou, KM Hanson, PS Albert, T Ji, J Cheng, ... The Plant Cell 33 (4), 917-939, 2021 | 29 | 2021 |
| Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler The Plant Cell 33 (4), 901-916, 2021 | 27 | 2021 |
| The supernumerary B chromosome of maize: drive and genomic conflict JA Birchler, H Yang Open Biology 11 (11), 210197, 2021 | 20 | 2021 |
| Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance AF Johnson, J Hou, H Yang, X Shi, C Chen, MS Islam, T Ji, J Cheng, ... Journal of Genetics and Genomics 47 (2), 93-103, 2020 | 18 | 2020 |
| The gene balance hypothesis: epigenetics and dosage effects in plants X Shi, C Chen, H Yang, J Hou, T Ji, J Cheng, RA Veitia, JA Birchler Plant epigenetics and epigenomics: methods and protocols, 161-171, 2020 | 17 | 2020 |
| Effect of aneuploidy of a non‐essential chromosome on gene expression in maize X Shi, H Yang, C Chen, J Hou, T Ji, J Cheng, JA Birchler The Plant Journal 110 (1), 193-211, 2022 | 15 | 2022 |
| Interpretable attention model in transcription factor binding site prediction with deep neural networks C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng bioRxiv, 648691, 2019 | 14 | 2019 |
| Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize X Shi, H Yang, C Chen, J Hou, T Ji, J Cheng, JA Birchler Nature Communications 13 (1), 3014, 2022 | 8 | 2022 |
| MicroRNAs play regulatory roles in genomic balance X Shi, H Yang, JA Birchler BioEssays 45 (2), 2200187, 2023 | 7 | 2023 |
| GNET2: an R package for constructing gene regulatory networks from transcriptomic data C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng Bioinformatics 37 (14), 2068-2069, 2021 | 6 | 2021 |
| De novo centromere formation on chromosome fragments with an inactive centromere in maize (Zea mays) RN Douglas, H Yang, B Zhang, C Chen, F Han, J Cheng, JA Birchler Chromosome Research 29 (3), 313-325, 2021 | 5 | 2021 |
| Transgenic direct terminal repeats of Dissociation (Ds) produce chromosomal breakage in maize L Krishnaswamy, C Zhao, PS Albert, Z Gao, E Mazalale, AT York, ... The Nucleus 66 (3), 311-319, 2023 | 3 | 2023 |
| Genomic imbalance modulates transposable element expression in maize H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler Plant Communications 4 (2), 2023 | 3 | 2023 |
| Variation for maize B chromosome preferential fertilization: a component of the B chromosome drive mechanism VA Brennan, H Yang, Z Gao, JA Birchler The Nucleus 66 (3), 305-310, 2023 | 2 | 2023 |
| Synthetic minichromosomes in plants: past, present, and promise JA Birchler, J Kelly, J Singh, H Liu, Z Zhang, SN Char, M Sharma, H Yang, ... The Plant Journal 120 (6), 2356-2366, 2024 | | 2024 |