Online parallel accumulation–serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer F Meier, AD Brunner, S Koch, H Koch, M Lubeck, M Krause, N Goedecke, ... Molecular & Cellular Proteomics 17 (12), 2534-2545, 2018 | 886 | 2018 |
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition F Meier, AD Brunner, M Frank, A Ha, I Bludau, E Voytik, ... Nature Methods 17 (12), 1229-1236, 2020 | 668 | 2020 |
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ... bioRxiv, 2020 | 454 | 2020 |
Parallel accumulation–serial fragmentation (PASEF): Multiplying sequencing speed and sensitivity by synchronized scans in a trapped ion mobility device F Meier, S Beck, N Grassl, M Lubeck, MA Park, O Raether, M Mann Journal of proteome research 14 (12), 5378-5387, 2015 | 419 | 2015 |
BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes F Meier, PE Geyer, SV Winter, J Cox, M Mann Nature Methods 15 (6), 440-448, 2018 | 378 | 2018 |
A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics N Bache, PE Geyer, DB Bekker-Jensen, O Hoerning, L Falkenby, PV Treit, ... Molecular & Cellular Proteomics 17 (11), 2284-2296, 2018 | 361 | 2018 |
Region and cell-type resolved quantitative proteomic map of the human heart S Doll, M Dreßen, PE Geyer, DN Itzhak, C Braun, SA Doppler, F Meier, ... Nature communications 8 (1), 1-13, 2017 | 294 | 2017 |
Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts CG Vasilopoulou, K Sulek, AD Brunner, NS Meitei, U Schweiger-Hufnagel, ... Nature communications 11 (1), 331, 2020 | 222 | 2020 |
The Impact II, a very high-resolution quadrupole time-of-flight instrument (QTOF) for deep shotgun proteomics S Beck, A Michalski, O Raether, M Lubeck, S Kaspar, N Goedecke, ... Molecular & Cellular Proteomics 14 (7), 2014-2029, 2015 | 220 | 2015 |
Noninvasive proteomic biomarkers for alcohol-related liver disease L Niu, M Thiele, PE Geyer, DN Rasmussen, HE Webel, A Santos, R Gupta, ... Nature Medicine 28 (6), 1277-1287, 2022 | 194 | 2022 |
Trapped Ion Mobility Spectrometry and Parallel Accumulation–Serial Fragmentation in Proteomics F Meier, MA Park, M Mann Molecular & Cellular Proteomics 20, 2021 | 152 | 2021 |
Deep learning the collisional cross sections of the peptide universe from a million experimental values F Meier, ND Köhler, AD Brunner, JMH Wanka, E Voytik, MT Strauss, ... Nature Communications 12 (1), 1-12, 2021 | 133 | 2021 |
MaxQuant. Live enables global targeting of more than 25,000 peptides C Wichmann, F Meier, SV Winter, AD Brunner, J Cox, M Mann Molecular & Cellular Proteomics 18 (5), 982-994, 2019 | 128 | 2019 |
Rapid and in-depth coverage of the (phospho-) proteome with deep libraries and optimal window design for dia-PASEF P Skowronek, M Thielert, E Voytik, MC Tanzer, FM Hansen, S Willems, ... Molecular & Cellular Proteomics 21 (9), 2022 | 124 | 2022 |
EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification SV Winter, F Meier, C Wichmann, J Cox, M Mann, F Meissner Nature Methods 15 (7), 527-530, 2018 | 110 | 2018 |
Plasma proteome profiling reveals dynamics of inflammatory and lipid homeostasis markers after Roux-en-Y gastric bypass surgery NJW Albrechtsen, PE Geyer, S Doll, PV Treit, KN Bojsen-Møller, ... Cell systems 7 (6), 601-612. e3, 2018 | 100 | 2018 |
International ring trial of a high resolution targeted metabolomics and lipidomics platform for serum and plasma analysis JW Thompson, KJ Adams, J Adamski, Y Asad, D Borts, JA Bowden, ... Analytical chemistry 91 (22), 14407-14416, 2019 | 99 | 2019 |
AlphaPept: a modern and open framework for MS-based proteomics MT Strauss, I Bludau, WF Zeng, E Voytik, C Ammar, JP Schessner, ... Nature Communications 15 (1), 2168, 2024 | 46 | 2024 |
The social and structural architecture of the yeast protein interactome AC Michaelis, AD Brunner, M Zwiebel, F Meier, MT Strauss, I Bludau, ... Nature 624 (7990), 192-200, 2023 | 46* | 2023 |
Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition P Skowronek, F Krohs, M Lubeck, G Wallmann, ECM Itang, P Koval, ... Molecular & Cellular Proteomics 22 (2), 2023 | 46 | 2023 |