| ACP acylation is an acetyl-CoA-dependent modification required for electron transport chain assembly JG Van Vranken, SM Nowinski, KJ Clowers, MY Jeong, Y Ouyang, ... Molecular cell 71 (4), 567-580. e4, 2018 | 92 | 2018 |
| Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: results from the IMPACC study A Ozonoff, J Schaenman, ND Jayavelu, CE Milliren, CS Calfee, CB Cairns, ... EBioMedicine 83, 2022 | 46 | 2022 |
| Web-based search tool for visualizing instrument performance using the triple knockout (TKO) proteome standard JP Gygi, Q Yu, J Navarrete-Perea, R Rad, SP Gygi, JA Paulo Journal of Proteome Research 18 (2), 687-693, 2018 | 45 | 2018 |
| Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients J Diray-Arce, S Fourati, ND Jayavelu, R Patel, C Maguire, AC Chang, ... Cell Reports Medicine 4 (6), 2023 | 28 | 2023 |
| The Immune Signatures data resource, a compendium of systems vaccinology datasets J Diray-Arce, HER Miller, E Henrich, B Gerritsen, MP Mulè, S Fourati, ... Scientific data 9 (1), 635, 2022 | 22 | 2022 |
| Predictive overfitting in immunological applications: Pitfalls and solutions JP Gygi, SH Kleinstein, L Guan Human Vaccines & Immunotherapeutics 19 (2), 2251830, 2023 | 20 | 2023 |
| A triple knockout isobaric-labeling quality control platform with an integrated online database search JP Gygi, R Rad, J Navarrete-Perea, S Younesi, SP Gygi, JA Paulo Journal of the American Society for Mass Spectrometry 31 (7), 1344-1349, 2020 | 17 | 2020 |
| Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality JP Gygi, C Maguire, RK Patel, P Shinde, A Konstorum, CP Shannon, L Xu, ... The Journal of clinical investigation 134 (9), 2024 | 13* | 2024 |
| Assessing interference in isobaric tag‐based sample multiplexing using an 18‐plex interference standard J Navarrete‐Perea, X Liu, R Rad, JP Gygi, SP Gygi, JA Paulo Proteomics 22 (7), 2100317, 2022 | 11 | 2022 |
| Methods and systems for locating positions T Cowley, C Chlebek, G Duncan, J Gygi, A Scharman US Patent App. 11/841,304, 2009 | 11 | 2009 |
| IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition BS Haslund-Gourley, K Woloszczuk, J Hou, J Connors, G Cusimano, ... Nature communications 15 (1), 404, 2024 | 7 | 2024 |
| A supervised Bayesian factor model for the identification of multi-omics signatures JP Gygi, A Konstorum, S Pawar, E Aron, SH Kleinstein, L Guan Bioinformatics 40 (5), btae202, 2024 | 4* | 2024 |
| A multi-omics systems vaccinology resource to develop and test computational models of immunity P Shinde, F Soldevila, J Reyna, M Aoki, M Rasmussen, L Willemsen, ... Cell Reports Methods 4 (3), 2024 | 3* | 2024 |
| Magnetic easy step in/out snow board binding AJ Scharman, TM Smith, AM Prinos, CE Hughes, JS Rice, ZJ Atanasoff, ... US Patent App. 12/214,772, 2010 | 3 | 2010 |
| Identification of a multi-omics factor predictive of long COVID in the IMPACC study G Gabernet, J Maciuch, JP Gygi, JF Moore, A Hoch, C Syphurs, T Chu, ... bioRxiv, 2025.02. 12.637926, 2025 | | 2025 |
| Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors ND Jayavelu, H Samaha, ST Wimalasena, A Hoch, JP Gygi, G Gabernet, ... medRxiv, 2025.02. 12.25322164, 2025 | | 2025 |
| Unraveling SARS-CoV-2 Host-Response Heterogeneity through Longitudinal Molecular Subtyping K Wang, Y Nie, C Maguire, C Syphurs, H Sheen, M Karoly, L Lapp, ... bioRxiv, 2024.11. 22.624784, 2024 | | 2024 |
| Putting computational models of immunity to the test-an invited challenge to predict B. pertussis vaccination outcomes P Shinde, L Willemsen, M Anderson, M Aoki, S Basu, JG Burel, P Cheng, ... bioRxiv, 2024 | | 2024 |
| Supervised Integration of Multi-Omics Immune Profiles via Latent Factor Modeling J Gygi Yale University, 2024 | | 2024 |
