| RNAInter in 2020: RNA interactome repository with increased coverage and annotation Y Lin, T Liu, T Cui, Z Wang, Y Zhang, P Tan, Y Huang, J Yu, D Wang Nucleic acids research 48 (D1), D189-D197, 2020 | 212 | 2020 |
| CellCall: integrating paired ligand–receptor and transcription factor activities for cell–cell communication Y Zhang, T Liu, X Hu, M Wang, J Wang, B Zou, P Tan, T Cui, Y Dou, ... Nucleic acids research 49 (15), 8520-8534, 2021 | 173 | 2021 |
| RNALocate v2. 0: an updated resource for RNA subcellular localization with increased coverage and annotation T Cui, Y Dou, P Tan, Z Ni, T Liu, DL Wang, Y Huang, K Cai, X Zhao, D Xu, ... Nucleic acids research 50 (D1), D333-D339, 2022 | 96 | 2022 |
| Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis Y Zhang, T Liu, J Wang, B Zou, L Li, L Yao, K Chen, L Ning, B Wu, X Zhao, ... Bioinformatics 37 (14), 2025-2032, 2021 | 79 | 2021 |
| cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function Y Huang, J Wang, Y Zhao, H Wang, T Liu, Y Li, T Cui, W Li, Y Feng, J Luo, ... Nucleic Acids Research 49 (D1), D65-D70, 2021 | 55 | 2021 |
| Attention is all you need: utilizing attention in AI-enabled drug discovery Y Zhang, C Liu, M Liu, T Liu, H Lin, CB Huang, L Ning Briefings in bioinformatics 25 (1), bbad467, 2024 | 48 | 2024 |
| RIscoper: a tool for RNA–RNA interaction extraction from the literature Y Zhang, T Liu, L Chen, J Yang, J Yin, Y Zhang, Z Yun, H Xu, L Ning, ... Bioinformatics 35 (17), 3199-3202, 2019 | 34 | 2019 |
| Targeting APLN/APJ restores blood-testis barrier and improves spermatogenesis in murine and human diabetic models K Song, X Yang, G An, X Xia, J Zhao, X Xu, C Wan, T Liu, Y Zheng, S Ren, ... Nature Communications 13 (1), 7335, 2022 | 31 | 2022 |
| CodLncScape provides a self‐enriching framework for the systematic collection and exploration of coding LncRNAs T Liu, H Qiao, Z Wang, X Yang, X Pan, Y Yang, X Ye, T Sakurai, H Lin, ... Advanced Science 11 (22), 2400009, 2024 | 13 | 2024 |
| LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism T Liu, B Zou, M He, Y Hu, Y Dou, T Cui, P Tan, S Li, S Rao, Y Huang, ... Briefings in bioinformatics 24 (1), bbac579, 2023 | 11 | 2023 |
| Cm-siRPred: Predicting chemically modified siRNA efficiency based on multi-view learning strategy T Liu, J Huang, D Luo, L Ren, L Ning, J Huang, H Lin, Y Zhang International journal of biological macromolecules 264, 130638, 2024 | 10 | 2024 |
| Exploration of invasive mechanisms via global ncRNA-associated virus-host crosstalk T Liu, Y Zhang, Y Lin, Y Hu, Y Zhang, D Wang, Y Wang, L Ning Genomics 112 (2), 1643-1650, 2020 | 7 | 2020 |
| ACVPred: Enhanced prediction of anti-coronavirus peptides by transfer learning combined with data augmentation Y Xu, T Liu, Y Yang, J Kang, L Ren, H Ding, Y Zhang Future Generation Computer Systems 160, 305-315, 2024 | 4 | 2024 |
| Mapping autophagy-related membrane contact site proteins and complexes with AutoMCS Navigator T Liu, X Pan, L Ren, X Ye, K Zheng, Y Zhang Autophagy 20 (11), 2593-2595, 2024 | | 2024 |
| Deciphering the Complex Characterization of Coding LncRNA T Liu, X Ye, T Sakurai 2024 International Joint Conference on Neural Networks (IJCNN), 1-8, 2024 | | 2024 |