| Epigenetic and genetic influences on DNA methylation variation in maize populations SR Eichten, R Briskine, J Song, Q Li, R Swanson-Wagner, PJ Hermanson, ... The Plant Cell 25 (8), 2783-2797, 2013 | 255 | 2013 |
| RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ... Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015 | 230 | 2015 |
| Genetic perturbation of the maize methylome Q Li, SR Eichten, PJ Hermanson, VM Zaunbrecher, J Song, J Wendt, ... The Plant Cell 26 (12), 4602-4616, 2014 | 201 | 2014 |
| Genomic distribution of H3K9me2 and DNA methylation in a maize genome PT West, Q Li, L Ji, SR Eichten, J Song, MW Vaughn, RJ Schmitz, ... PloS one 9 (8), e105267, 2014 | 165 | 2014 |
| Apyrase suppression raises extracellular ATP levels and induces gene expression and cell wall changes characteristic of stress responses MH Lim, J Wu, J Yao, IF Gallardo, JW Dugger, LJ Webb, J Huang, ... Plant Physiology 164 (4), 2054-2067, 2014 | 84 | 2014 |
| Examining the causes and consequences of context-specific differential DNA methylation in maize Q Li, J Song, PT West, G Zynda, SR Eichten, MW Vaughn, NM Springer Plant physiology 168 (4), 1262-1274, 2015 | 73 | 2015 |
| Genome-wide analysis of the Arabidopsis replication timing program L Concia, AM Brooks, E Wheeler, GJ Zynda, EE Wear, C LeBlanc, J Song, ... Plant physiology 176 (3), 2166-2185, 2018 | 42 | 2018 |
| ANN1 and ANN2 function in post-phloem sugar transport in root tips to affect primary root growth J Wang, J Song, G Clark, SJ Roux Plant physiology 178 (1), 390-401, 2018 | 36 | 2018 |
| Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips EE Wear, J Song, GJ Zynda, C LeBlanc, TJ Lee, L Mickelson-Young, ... The Plant Cell 29 (9), 2126-2149, 2017 | 33 | 2017 |
| Subtle perturbations of the maize methylome reveal genes and transposons silenced by chromomethylase or RNA-directed DNA methylation pathways SN Anderson, GJ Zynda, J Song, Z Han, MW Vaughn, Q Li, NM Springer G3: Genes, Genomes, Genetics 8 (6), 1921-1932, 2018 | 31 | 2018 |
| CpG island-mediated global gene regulatory modes in mouse embryonic stem cells S Beck, BK Lee, C Rhee, J Song, AJ Woo, J Kim Nature communications 5 (1), 5490, 2014 | 28 | 2014 |
| CyVerse: cyberinfrastructure for open science TL Swetnam, PB Antin, R Bartelme, A Bucksch, D Camhy, G Chism, I Choi, ... PLoS computational biology 20 (2), e1011270, 2024 | 18 | 2024 |
| Repliscan: a tool for classifying replication timing regions GJ Zynda, J Song, L Concia, EE Wear, L Hanley-Bowdoin, WF Thompson, ... BMC bioinformatics 18, 1-14, 2017 | 17 | 2017 |
| Implications of CpG islands on chromosomal architectures and modes of global gene regulation S Beck, C Rhee, J Song, BK Lee, L LeBlanc, L Cannon, J Kim Nucleic Acids Research 46 (9), 4382-4391, 2018 | 14 | 2018 |
| Identifier services: modeling and implementing distributed data management in cyberinfrastructure M Esteva, RL Walls, AB Magill, W Xu, R Huang, J Carson, J Song Data and Information Management 3 (1), 26-39, 2019 | 6 | 2019 |
| Content-based comparison for collections identification W Xu, R Huang, M Esteva, J Song, R Walls 2016 IEEE International Conference on Big Data (Big Data), 3283-3289, 2016 | 6 | 2016 |
| Bisulfite sequence analyses using CyVerse discovery environment: from mapping to DMRs J Song, G Zynda, S Beck, NM Springer, MW Vaughn Current protocols in plant biology 1 (3), 510-529, 2016 | 5 | 2016 |
| Conserved dual-mode gene regulation programs in higher eukaryotes JY Lee, J Song, L LeBlanc, I Davis, J Kim, S Beck Nucleic Acids Research 49 (5), 2583-2597, 2021 | 4 | 2021 |
| Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots EE Wear, J Song, GJ Zynda, L Mickelson-Young, C LeBlanc, TJ Lee, ... PLoS Genetics 16 (10), e1008623, 2020 | 4 | 2020 |
| Early COVID-19 pandemic modeling: Three compartmental model case studies from Texas, USA KA Pierce, E Ho, X Wang, R Pasco, Z Du, G Zynda, J Song, G Wells, ... Computing in science & engineering 23 (1), 25-34, 2020 | 2 | 2020 |