| Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths AY Kawahara, D Plotkin, M Espeland, K Meusemann, EFA Toussaint, ... Proceedings of the National Academy of Sciences 116 (45), 22657-22663, 2019 | 427 | 2019 |
| A comprehensive and dated phylogenomic analysis of butterflies M Espeland, J Breinholt, KR Willmott, AD Warren, R Vila, EFA Toussaint, ... Current Biology 28 (5), 770-778. e5, 2018 | 381 | 2018 |
| Phylogenomics provides strong evidence for relationships of butterflies and moths AY Kawahara, JW Breinholt Proceedings of the Royal Society B 281 (1788), 1471-2954, 2014 | 245 | 2014 |
| A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans JM Wolfe, JW Breinholt, KA Crandall, AR Lemmon, EM Lemmon, LE Timm, ... Proceedings of the Royal Society B 286 (1901), 20190079, 2019 | 202 | 2019 |
| The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea … HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ... Systematic Biology 63 (4), 457-479, 2014 | 188 | 2014 |
| Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for anchored phylogenomics JW Breinholt, C Earl, AR Lemmon, EM Lemmon, L Xiao, AY Kawahara Systematic Biology 67 (1), 78-93, 2018 | 172 | 2018 |
| Evidence for common horizontal transmission of Wolbachia among butterflies and moths MZ Ahmed, JW Breinholt, AY Kawahara BMC evolutionary biology 16, 1-16, 2016 | 148 | 2016 |
| Underground evolution: new roots for the old tree of lumbricid earthworms J Domínguez, M Aira, JW Breinholt, M Stojanovic, SW James, ... Molecular phylogenetics and evolution 83, 7-19, 2015 | 116 | 2015 |
| Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data JW Breinholt, AY Kawahara Genome Biology and Evolution 5 (11), 2082-2092, 2013 | 115 | 2013 |
| A molecular phylogeny and revised higher‐level classification for the leaf‐mining moth family G racillariidae and its implications for larval host‐use evolution AY Kawahara, D Plotkin, I Ohshima, C LOPEZ‐VAAMONDE, PR Houlihan, ... Systematic Entomology 42 (1), 60-81, 2017 | 104 | 2017 |
| Moth tails divert bat attack: evolution of acoustic deflection JR Barber, BC Leavell, AL Keener, JW Breinholt, BA Chadwell, ... Proceedings of the National Academy of Sciences 112 (9), 2812-2816, 2015 | 98 | 2015 |
| Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives CA Hamilton, RA St Laurent, K Dexter, IJ Kitching, JW Breinholt, A Zwick, ... BMC evolutionary biology 19, 1-13, 2019 | 96 | 2019 |
| A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins AY Kawahara, C Storer, APS Carvalho, DM Plotkin, FL Condamine, ... Nature ecology & evolution 7 (6), 903-913, 2023 | 87 | 2023 |
| Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms DI Speiser, MS Pankey, AK Zaharoff, BA Battelle, HD Bracken-Grissom, ... BMC bioinformatics 15, 1-12, 2014 | 83 | 2014 |
| The Global Invertebrate Genomics Alliance (GIGA): Developing community resources to study diverse invertebrate genomes JV Lopez, H Bracken-Grissom, AG Collins, T Collins, K Crandall, D Distel, ... Journal of Heredity 105, 2014 | 81 | 2014 |
| Phylogeny and classification of Odonata using targeted genomics SM Bybee, VJ Kalkman, RJ Erickson, PB Frandsen, JW Breinholt, ... Molecular phylogenetics and evolution 160, 107115, 2021 | 77 | 2021 |
| Unioverse: a phylogenomic resource for reconstructing the evolution of freshwater mussels (Bivalvia, Unionoida) JM Pfeiffer, JW Breinholt, LM Page Molecular Phylogenetics and Evolution 137, 114-126, 2019 | 74 | 2019 |
| Anchored phylogenomics illuminates the skipper butterfly tree of life EFA Toussaint, JW Breinholt, C Earl, AD Warren, AVZ Brower, M Yago, ... BMC Evolutionary Biology 18, 1-11, 2018 | 73 | 2018 |
| A target enrichment probe set for resolving the flagellate land plant tree of life JW Breinholt, SB Carey, GP Tiley, EC Davis, L Endara, SF McDaniel, ... Applications in plant sciences 9 (1), e11406, 2021 | 71 | 2021 |
| Body size affects the evolution of eyespots in caterpillars TJ Hossie, J Skelhorn, JW Breinholt, AY Kawahara, TN Sherratt Proceedings of the National Academy of Sciences 112 (21), 6664-6669, 2015 | 68 | 2015 |