David Koslicki

Получаване на мой собствен потребителски профил

Позовавания

	Всички	От 2020
Позовавания	2820	2250
h-индекс	26	24
i10-индекс	35	31

580

290

145

435

20142015201620172018201920202021202220232024202530 37 52 82 137 205 282 308 468 543 562 85

Публичен достъп

Преглед на всички

37 статии

1 статия

налични

неналични

Въз основа на изисквания при финансирането

Съавтори

Serghei MangulAssistant Professor at USCПотвърден имейл адрес: usc.edu
Eleazar EskinUniversity of California, Los AngelesПотвърден имейл адрес: cs.ucla.edu
Simon FoucartProfessor of Mathematics, Texas A&M UniversityПотвърден имейл адрес: tamu.edu
Gail RosenProfessor of ECE, Drexel UniversityПотвърден имейл адрес: ece.drexel.edu
Roel A. OphoffProfessor of Psychiatry and Human Genetics, University of California Los AngelesПотвърден имейл адрес: ucla.edu
Anil Ori, PhDDepartment of Psychiatry, Amsterdam UMC, the NetherlandsПотвърден имейл адрес: amsterdamumc.nl
Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandПотвърден имейл адрес: wur.nl
Loes Olde LoohuisAssistant professor at UCLAПотвърден имейл адрес: mednet.ucla.edu
Alice Carolyn McHardyHelmholtz Centre for Infection Research, GermanyПотвърден имейл адрес: helmholtz-hzi.de
Saikat ChatterjeeKTH - Royal Institute of TechnologyПотвърден имейл адрес: kth.se
Mikko VehkaperäNokia Mobile NetworksПотвърден имейл адрес: nokia.com
Christopher Clemens MayerAIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Medical Signal AnalysisПотвърден имейл адрес: ait.ac.at
Martin BachlerResearch Engineer, AIT Austrian Institute of Technology GmbH, Center for Health & BioresourcesПотвърден имейл адрес: ait.ac.at
Daniel FalushShanghai Institute of Immunity and InfectionПотвърден имейл адрес: ips.ac.cn
Alexander SczyrbaForschungszentrum Jülich (IBG-5), Bielefeld University, Centrum for Biotechnology (CeBiTec)Потвърден имейл адрес: fz-juelich.de
Aaron DarlingIndependentПотвърден имейл адрес: illumina.com
Alan WalkerProfessor, Rowett Institute, University of AberdeenПотвърден имейл адрес: abdn.ac.uk
Mark NovakOregon State UniversityПотвърден имейл адрес: oregonstate.edu
Nicolas InnocentiSvipe ABПотвърден имейл адрес: innocenti.se
Mikael SkoglundKTH Royal Institute of TechnologyПотвърден имейл адрес: kth.se

Следене

David Koslicki

Computer Science and Engineering, Biology, Huck Institutes of the Life Sciences, Penn State

Потвърден имейл адрес: psu.edu - Начална страница

Computational genomics Metagenomics Probability Knowledge Graphs


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017	822	2017
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	274	2022
Technology dictates algorithms: recent developments in read alignment M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ... Genome biology 22 (1), 249, 2021	140	2021
Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia LMO Loohuis, S Mangul, A Ori, G Jospin, D Koslicki, HT Yang, T Wu, ... Nature Translational Psychiatry 8 (96), 9, 2018	112*	2018
Striped UniFrac: enabling microbiome analysis at unprecedented scale D McDonald, Y Vázquez-Baeza, D Koslicki, J McClelland, N Reeve, Z Xu, ... Nature methods 15 (11), 847-848, 2018	107	2018
Assessing taxonomic metagenome profilers with OPAL F Meyer, A Bremges, P Belmann, S Janssen, AC McHardy, D Koslicki Genome biology 20, 1-10, 2019	97	2019
Sparse recovery by means of nonnegative least squares S Foucart, D Koslicki IEEE Signal Processing Letters 21 (4), 498-502, 2014	81	2014
Topological entropy of DNA sequences D Koslicki Bioinformatics 27 (8), 1061-1067, 2011	75	2011
Toward a universal biomedical data translator TBDT Consortium Clinical and Translational Science, 1--5, 2018	71*	2018
Metalign: efficient alignment-based metagenomic profiling via containment min hash N LaPierre, M Alser, E Eskin, D Koslicki, S Mangul Genome biology 21, 1-15, 2020	69	2020
On entropy-based data mining A Holzinger, M Hörtenhuber, C Mayer, M Bachler, S Wassertheurer, ... Interactive Knowledge Discovery and Data Mining in Biomedical Informatics …, 2014	69	2014
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022	67	2022
MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation D Koslicki, D Falush MSystems 1 (3), 10.1128/msystems. 00020-16, 2016	66	2016
Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers L Irber, PT Brooks, T Reiter, NT Pierce-Ward, MR Hera, D Koslicki, ... BioRxiv, 2022.01. 11.475838, 2022	63	2022
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing D Koslicki, S Foucart, G Rosen Bioinformatics 29 (17), 2096-2102, 2013	62	2013
Improving minhash via the containment index with applications to metagenomic analysis D Koslicki, H Zabeti Applied Mathematics and Computation 354, 206-215, 2019	58	2019
Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit F Meyer, TR Lesker, D Koslicki, A Fritz, A Gurevich, AE Darling, A Sczyrba, ... Nature protocols 16 (4), 1785-1801, 2021	54	2021
WGSQuikr: fast whole-genome shotgun metagenomic classification D Koslicki, S Foucart, G Rosen PloS one 9 (3), e91784, 2014	52	2014
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin BMC genomics 20, 1-10, 2019	41	2019
RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine EC Wood, AK Glen, LG Kvarfordt, F Womack, L Acevedo, TS Yoon, C Ma, ... BMC bioinformatics 23 (1), 400, 2022	37	2022

Системата не може да изпълни операцията сега. Опитайте отново по-късно.

Статии 1–20

Позовавания годишно

Дублирани описания

Обединени библиографски описания

Добавяне на съавториСъавтори

Следене

Позовавания

Съавтори