| MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data G Finak, A McDavid, M Yajima, J Deng, V Gersuk, AK Shalek, CK Slichter, ... Genome biology 16, 1-13, 2015 | 2749 | 2015 |
| Why we (usually) don't have to worry about multiple comparisons A Gelman, J Hill, M Yajima Journal of research on educational effectiveness 5 (2), 189-211, 2012 | 1572 | 2012 |
| R2jags: Using R to run ‘JAGS’ YS Su, M Yajima R package version 0.5-7 34, 2015 | 808 | 2015 |
| arm: Data analysis using regression and multilevel/hierarchical models A Gelman, YS Su, M Yajima, J Hill, MG Pittau, J Kerman, T Zheng, V Dorie | 659 | 2014 |
| Multiple imputation with diagnostics (mi) in R: Opening windows into the black box YS Su, A Gelman, J Hill, M Yajima Journal of Statistical Software 45, 1-31, 2011 | 655 | 2011 |
| R2jags: A Package for Running jags from R YS Su, M Yajima R package version 0.03-08, URL http://CRAN. R-project. org/package= R2jags 35, 2012 | 484 | 2012 |
| Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice A Bitto, TK Ito, VV Pineda, NJ LeTexier, HZ Huang, E Sutlief, H Tung, ... elife 5, e16351, 2016 | 439 | 2016 |
| Decontamination of ambient RNA in single-cell RNA-seq with DecontX S Yang, SE Corbett, Y Koga, Z Wang, WE Johnson, M Yajima, ... Genome biology 21, 1-15, 2020 | 356 | 2020 |
| Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy A Sheih, V Voillet, LA Hanafi, HA DeBerg, M Yajima, R Hawkins, V Gersuk, ... Nature communications 11 (1), 219, 2020 | 229 | 2020 |
| arm: Data analysis using regression and multilevel/hierarchical models A Gelman, YS Su CRAN: Contributed Packages, 2007 | 170 | 2007 |
| Package ‘r2jags’ YS Su, M Yajima, MYS Su, J SystemRequirements R package version 0.03-08, URL http://CRAN. R-project. org/package= R2jags, 2015 | 82 | 2015 |
| Package ‘arm’ A Gelman, YS Su, M Yajima, J Hill, MG Pittau, J Kerman, T Zheng, V Dorie, ... Data analysis using regression and multilevel/hierarchical models, 2015 | 82 | 2015 |
| Controlled human malaria infection leads to long-lasting changes in innate and innate-like lymphocyte populations M Mpina, NJ Maurice, M Yajima, CK Slichter, HW Miller, M Dutta, ... The Journal of Immunology 199 (1), 107-118, 2017 | 57 | 2017 |
| Undersmoothed kernel entropy estimators L Paninski, M Yajima IEEE Transactions on Information Theory 54 (9), 4384-4388, 2008 | 56 | 2008 |
| Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data R Hong, Y Koga, S Bandyadka, A Leshchyk, Y Wang, V Akavoor, X Cao, ... Nature communications 13 (1), 1688, 2022 | 50 | 2022 |
| Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program TT Karagiannis, JP Cleary Jr, B Gok, AJ Henderson, NG Martin, M Yajima, ... Nature communications 11 (1), 2611, 2020 | 49 | 2020 |
| R2jags: Using R to run JAGS; 2015 YS Su, M Yajima URL https://CRAN. R-project. org/package= R2jags. R package version 0.5-7, 2018 | 41 | 2018 |
| PKC downregulation upon rapamycin treatment attenuates mitochondrial disease M Martin-Perez, AS Grillo, TK Ito, AS Valente, J Han, SW Entwisle, ... Nature metabolism 2 (12), 1472-1481, 2020 | 36 | 2020 |
| mi: Missing data imputation and model checking A Gelman, J Hill, YS Su, M Yajima, MG Pittau | 34 | 2014 |
| Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data Z Wang, S Yang, Y Koga, SE Corbett, CV Shea, WE Johnson, M Yajima, ... NAR Genomics and Bioinformatics 4 (3), lqac066, 2022 | 31 | 2022 |