Следене
Mahfuza Sharmin
Mahfuza Sharmin
Postdoctoral Research Fellow, Stanford University. PhD in Computer Science, University of Maryland
Потвърден имейл адрес: stanford.edu
Заглавие
Позовавания
Позовавания
Година
Technical note on transcription factor motif discovery from importance scores (TF-MoDISco) version 0.5. 6.5
A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin, ...
arXiv preprint arXiv:1811.00416, 2018
1482018
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
DS Kim, VI Risca, DL Reynolds, J Chappell, AJ Rubin, N Jung, ...
Nature genetics 53 (11), 1564-1576, 2021
692021
Technical note on transcription factor motif discovery from importance scores (TF-MoDISco) version 0.5. 6.5. arXiv
A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin, ...
arXiv preprint arXiv:1811.00416, 2018
432018
Beyond synthetic lethality: charting the landscape of pairwise gene expression states associated with survival in cancer
A Magen, AD Sahu, JS Lee, M Sharmin, A Lugo, JS Gutkind, AA Schäffer, ...
Cell reports 28 (4), 938-948. e6, 2019
402019
Tf-Modisco v0. 4.4. 2-Alpha
A Shrikumar, K Tian, A Shcherbina, Ž Avsec, A Banerjee, M Sharmin, ...
arXiv preprint arXiv:1811.00416, 2018
352018
Pancake flipping with two spatulas
M Sharmin, R Yeasmin, M Hasan, A Rahman, MS Rahman
Electronic Notes in Discrete Mathematics 36, 231-238, 2010
212010
Ensuring beta-availability in p2p social networks
N Shahriar, SR Chowdhury, M Sharmin, R Ahmed, R Boutaba, B Mathieu
2013 IEEE 33rd International Conference on Distributed Computing Systems …, 2013
182013
Diurnal availability for peer-to-peer systems
N Shahriar, M Sharmin, R Ahmed, MM Rahman, R Boutaba, B Mathieu
2012 IEEE Consumer Communications and Networking Conference (CCNC), 619-623, 2012
182012
Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging
RW Yeo, OY Zhou, BL Zhong, ED Sun, P Navarro Negredo, S Nair, ...
Nature Aging 3 (7), 866-893, 2023
132023
Heterogeneity of transcription factor binding specificity models within and across cell lines
M Sharmin, HC Bravo, S Hannenhalli
Genome research 26 (8), 1110-1123, 2016
112016
Prediction and subtyping of hypertension from pan-tissue transcriptomic and genetic analyses
M Basu, M Sharmin, A Das, NU Nair, K Wang, JS Lee, YPC Chang, ...
Genetics 207 (3), 1121-1134, 2017
82017
Pancake flipping and sorting permutations
M Hasan, A Rahman, MK Rahman, MS Rahman, M Sharmin, R Yeasmin
Journal of Discrete Algorithms 33, 139-149, 2015
72015
Technical note on transcription factor motif discovery from importance scores (tf-modisco) version 0.5. 6.5, 2018
A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin, ...
URL https://arxiv. org/abs, 1811
61811
BEENE: Deep learning-based nonlinear embedding improves batch effect estimation
MA Rahman, AA Tutul, M Sharmin, MS Bayzid
Bioinformatics 39 (8), btad479, 2023
52023
Technical note on transcription factor motif discovery from importance scores (tf-modisco) version 0.5. 1.1. arXiv preprint 2018
A Shrikumar, K Tian, Ž Avsec, A Shcherbina, A Banerjee, M Sharmin
arXiv preprint arXiv:1811.00416, 0
5
Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer
M Sharmin, HC Bravo, S Hannenhalli
BMC cancer 16, 1-10, 2016
42016
Availability in P2P based online social networks
N Shahriar, SR Chowdhury, R Ahmed, M Sharmin, R Boutaba, B Mathieu
2017 4th International Conference on Networking, Systems and Security (NSysS …, 2017
32017
Cross-sectional Ct distributions from qPCR tests can provide an early warning signal for the spread of COVID-19 in communities
M Sharmin, M Manivannan, D Woo, O Sorel, JR Auclair, M Gandhi, ...
Frontiers in Public Health 11, 1185720, 2023
22023
SS-ADC: Scatter search with adaptive diversity control
S Rubya, S Monir, M Sharmin, MS Alam, MS Rahman
2012 7th International Conference on Electrical and Computer Engineering …, 2012
12012
Placement of unique restriction sites in synthetic genomes using multi-objective optimization
M Sharmin, MS Rahman
2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-4, 2012
12012
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