Следене
Travis Gagie
Travis Gagie
Associate Professor at Dalhousie University
Потвърден имейл адрес: dal.ca
Заглавие
Позовавания
Позовавания
Година
Fully functional suffix trees and optimal text searching in BWT-runs bounded space
T Gagie, G Navarro, N Prezza
Journal of the ACM (JACM) 67 (1), 1-54, 2020
2082020
New algorithms on wavelet trees and applications to information retrieval
T Gagie, G Navarro, SJ Puglisi
Theoretical Computer Science 426, 25-41, 2012
1422012
Optimal-time text indexing in BWT-runs bounded space
T Gagie, G Navarro, N Prezza
Proceedings of the Twenty-Ninth Annual ACM-SIAM Symposium on Discrete …, 2018
1362018
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
1352017
Wheeler graphs: A framework for BWT-based data structures
T Gagie, G Manzini, J Sirén
Theoretical computer science 698, 67-78, 2017
1192017
A faster grammar-based self-index
T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi
International Conference on Language and Automata Theory and Applications …, 2012
1182012
Lightweight data indexing and compression in external memory
P Ferragina, T Gagie, G Manzini
Algorithmica 63 (3), 707-730, 2012
1132012
Range quantile queries: Another virtue of wavelet trees
T Gagie, SJ Puglisi, A Turpin
International Symposium on String Processing and Information Retrieval, 1-6, 2009
1062009
LZ77-based self-indexing with faster pattern matching
T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi
Latin American Symposium on Theoretical Informatics, 731-742, 2014
932014
Colored range queries and document retrieval
T Gagie, J Kärkkäinen, G Navarro, SJ Puglisi
Theoretical Computer Science 483, 36-50, 2013
912013
Prefix-free parsing for building big BWTs
C Boucher, T Gagie, A Kuhnle, B Langmead, G Manzini, T Mun
Algorithms for Molecular Biology 14, 1-15, 2019
902019
Variable-order de Bruijn graphs
C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane
2015 data compression conference, 383-392, 2015
862015
Composite repetition-aware data structures
D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot
Combinatorial Pattern Matching: 26th Annual Symposium, CPM 2015, Ischia …, 2015
802015
Alphabet partitioning for compressed rank/select and applications
J Barbay, T Gagie, G Navarro, Y Nekrich
International Symposium on Algorithms and Computation, 315-326, 2010
772010
MONI: a pangenomic index for finding maximal exact matches
M Rossi, M Oliva, B Langmead, T Gagie, C Boucher
Journal of Computational Biology 29 (2), 169-187, 2022
722022
Refining the r-index
H Bannai, T Gagie, I Tomohiro
Theoretical Computer Science 812, 96-108, 2020
672020
Efficient fully-compressed sequence representations
J Barbay, F Claude, T Gagie, G Navarro, Y Nekrich
Algorithmica 69 (1), 232-268, 2014
662014
Large alphabets and incompressibility
T Gagie
Information Processing Letters 99 (6), 246-251, 2006
602006
Efficient construction of a complete index for pan-genomics read alignment
A Kuhnle, T Mun, C Boucher, T Gagie, B Langmead, G Manzini
Journal of Computational Biology 27 (4), 500-513, 2020
572020
Queries on LZ-bounded encodings
D Belazzougui, T Gagie, P Gawrychowski, J Kärkkäinen, A Ordónez, ...
2015 Data Compression Conference, 83-92, 2015
562015
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