Modeling the CRL4A ligase complex to predict target protein ubiquitination induced by cereblon-recruiting PROTACs N Bai, KM Riching, A Makaju, H Wu, TM Acker, SC Ou, Y Zhang, X Shen, ... Journal of Biological Chemistry 298 (4), 101653, 2022 | 57 | 2022 |
Free energetics of arginine permeation into model DMPC lipid bilayers: coupling of effective counterion concentration and lateral bilayer dimensions Y Hu, S Ou, S Patel The Journal of Physical Chemistry B 117 (39), 11641-11653, 2013 | 54 | 2013 |
Protein‐spanning water networks and implications for prediction of protein–protein interactions mediated through hydrophobic effects D Cui, S Ou, S Patel Proteins: Structure, Function, and Bioinformatics 82 (12), 3312-3326, 2014 | 38 | 2014 |
Free energetics of carbon nanotube association in pure and aqueous ionic solutions S Ou, S Patel, BA Bauer The Journal of Physical Chemistry B 116 (28), 8154-8168, 2012 | 32 | 2012 |
Free energetics and the role of water in the permeation of methyl guanidinium across the bilayer–water interface: insights from molecular dynamics simulations using charge … S Ou, TR Lucas, Y Zhong, BA Bauer, Y Hu, S Patel The Journal of Physical Chemistry B 117 (13), 3578-3592, 2013 | 30 | 2013 |
Protein denaturants at aqueous–hydrophobic interfaces: Self-consistent correlation between induced interfacial fluctuations and denaturant stability at the interface D Cui, SC Ou, S Patel The Journal of Physical Chemistry B 119 (1), 164-178, 2015 | 28 | 2015 |
Temperature Dependence and Energetics of Single Ions at the Aqueous Liquid–Vapor Interface S Ou, S Patel The Journal of Physical Chemistry B 117 (21), 6512-6523, 2013 | 26 | 2013 |
Solvation structure and energetics of single ions at the aqueous liquid–vapor interface BA Bauer, S Ou, S Patel Chemical physics letters 527, 22-26, 2012 | 24 | 2012 |
Spherical monovalent ions at aqueous liquid–vapor interfaces: Interfacial stability and induced interface fluctuations S Ou, Y Hu, S Patel, H Wan The Journal of Physical Chemistry B 117 (39), 11732-11742, 2013 | 23 | 2013 |
Dynamics and energetics of hydrophobically confined water BA Bauer, S Ou, S Patel, K Siva Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 85 (5 …, 2012 | 19 | 2012 |
Interactions between identical DNA double helices CL Lai, C Chen, SC Ou, M Prentiss, BM Pettitt Physical Review E 101 (3), 032414, 2020 | 18 | 2020 |
Liquid–Vapor Interfacial Properties of Aqueous Solutions of Guanidinium and Methyl Guanidinium Chloride: Influence of Molecular Orientation on Interface Fluctuations S Ou, D Cui, S Patel The Journal of Physical Chemistry B 117 (39), 11719-11731, 2013 | 13 | 2013 |
Role of spatial ionic distribution on the energetics of hydrophobic assembly and properties of the water/hydrophobe interface BA Bauer, S Ou, S Patel Physical Chemistry Chemical Physics 14 (6), 1892-1906, 2012 | 13 | 2012 |
Solute–solvent energetics based on proximal distribution functions SC Ou, BM Pettitt The Journal of Physical Chemistry B 120 (33), 8230-8237, 2016 | 12 | 2016 |
Ion-Specific Induced Fluctuations and Free Energetics of Aqueous Protein Hydrophobic Interfaces: Toward Connecting to Specific-Ion Behaviors at Aqueous Liquid–Vapor Interfaces D Cui, S Ou, E Peters, S Patel The Journal of Physical Chemistry B 118 (17), 4490-4504, 2014 | 12 | 2014 |
Molecular modeling of ions at interfaces: Exploring similarities to hydrophobic solvation through the lens of induced aqueous interfacial fluctuations SC Ou, D Cui, S Patel Physical Chemistry Chemical Physics 18 (44), 30357-30365, 2016 | 11 | 2016 |
Anomalous diffusion of DNA on a supported cationic lipid membrane CM Chang, YG Lau, SC Ou, TY Lin, WT Juan Europhysics Letters 109 (3), 38002, 2015 | 11 | 2015 |
Nonpolar solvation free energy from proximal distribution functions SC Ou, JA Drake, BM Pettitt The Journal of Physical Chemistry B 121 (15), 3555-3564, 2017 | 10 | 2017 |
Free energetics of rigid body association of ubiquitin binding domains: a biochemical model for binding mediated by hydrophobic interaction D Cui, S Ou, S Patel Proteins: Structure, Function, and Bioinformatics 82 (7), 1453-1468, 2014 | 9 | 2014 |
Free energy calculations based on coupling proximal distribution functions and thermodynamic cycles SC Ou, BM Pettitt Journal of chemical theory and computation 15 (4), 2649-2658, 2019 | 3 | 2019 |