| Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ... Molecular systems biology 18 (3), e10798, 2022 | 442 | 2022 |
| Rapid and in-depth coverage of the (phospho-) proteome with deep libraries and optimal window design for dia-PASEF | 119* | 2022 |
| Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome FA Rosenberger, M Thielert, MT Strauss, L Schweizer, C Ammar, ... Nature Methods 20 (10), 1530-1536, 2023 | 76 | 2023 |
| Spatial proteomics in three-dimensional intact specimens HS Bhatia, AD Brunner, F Öztürk, S Kapoor, Z Rong, H Mai, M Thielert, ... Cell 185 (26), 5040-5058. e19, 2022 | 76* | 2022 |
| Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel M Thielert, ECM Itang, C Ammar, FA Rosenberger, I Bludau, L Schweizer, ... Molecular Systems Biology, e11503, 2023 | 56 | 2023 |
| Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition P Skowronek, F Krohs, M Lubeck, G Wallmann, ECM Itang, P Koval, ... Molecular & Cellular Proteomics 22 (2), 2023 | 43 | 2023 |
| Making single-cell proteomics biologically relevant FA Rosenberger, M Thielert, M Mann Nature Methods 20 (3), 320-323, 2023 | 40 | 2023 |
| Functionalized scout fragments for site-specific covalent ligand discovery and optimization VM Crowley, M Thielert, BF Cravatt ACS central science 7 (4), 613-623, 2021 | 38 | 2021 |
| SPIN4 is a principal endogenous substrate of the E3 ubiquitin ligase DCAF16 X Zhang, M Thielert, H Li, BF Cravatt Biochemistry 60 (9), 637-642, 2021 | 17 | 2021 |
| Spatial proteomics identifies JAKi as treatment for a lethal skin disease TM Nordmann, H Anderton, A Hasegawa, L Schweizer, P Zhang, ... Nature, 1-9, 2024 | 11 | 2024 |
| AlphaViz: Visualization and validation of critical proteomics data directly at the raw data level E Voytik, P Skowronek, WF Zeng, MC Tanzer, AD Brunner, M Thielert, ... bioRxiv, 2022.07. 12.499676, 2022 | 8 | 2022 |
| IMBAS-MS Discovers Organ-Specific HLA Peptide Patterns in Plasma M Wahle, M Thielert, M Zwiebel, P Skowronek, WF Zeng, M Mann Molecular & Cellular Proteomics 23 (1), 2024 | 7 | 2024 |
| A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics TM Nordmann, L Schweizer, A Metousis, M Thielert, E Rodriguez, ... Molecular & Cellular Proteomics 22 (10), 2023 | 6 | 2023 |
| Spatial proteo-transcriptomic profiling reveals the molecular landscape of borderline ovarian tumors and their invasive progression L Schweizer, R Krishnan, A Shimizu, A Metousis, H Kenny, R Mendoza, ... medRxiv, 2023 | 4 | 2023 |
| AlphaDIA enables End-to-End Transfer Learning for Feature-Free Proteomics G Wallmann, P Skowronek, V Brennsteiner, M Lebedev, M Thielert, ... bioRxiv, 2024.05. 28.596182, 2024 | 2 | 2024 |
| Spatial Proteomics of Single Hepatocytes with Multiplexed Data-Independent Acquisition (mDIA) M Thielert, CAM Weiss, M Mann, FA Rosenberger Mass Spectrometry Based Single Cell Proteomics, 97-113, 2024 | 1 | 2024 |
| Single-cell spatial proteomics identifies the JAK/STAT pathway as an actionable therapeutic target in lethal cutaneous drug reactions T Nordmann, H Anderton, A Hasegawa, L Schweizer, P Zhang, ... medRxiv, 2023.11. 11.23295492, 2023 | 1 | 2023 |
