| GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks Bioinformatics, 2019 | 3912 | 2019 |
| A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature biotechnology, 2018 | 3044 | 2018 |
| Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature microbiology 2 (11), 1533-1542, 2017 | 1714 | 2017 |
| GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy DH Parks, M Chuvochina, C Rinke, AJ Mussig, PA Chaumeil, ... Nucleic acids research 50 (D1), D785-D794, 2022 | 1290 | 2022 |
| A complete domain-to-species taxonomy for Bacteria and Archaea DH Parks, M Chuvochina, PA Chaumeil, C Rinke, AJ Mussig, ... Nature biotechnology 38 (9), 1079-1086, 2020 | 1225 | 2020 |
| GTDB-Tk v2: memory friendly classification with the genome taxonomy database PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks Bioinformatics 38 (23), 5315-5316, 2022 | 719 | 2022 |
| A standardized archaeal taxonomy for the Genome Taxonomy Database C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil, AA Davín, DW Waite, ... Nature Microbiology 6 (7), 946-959, 2021 | 339 | 2021 |
| ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures V Herzig, DLA Wood, F Newell, PA Chaumeil, Q Kaas, GJ Binford, ... Nucleic acids research 39 (suppl_1), D653-D657, 2010 | 208 | 2010 |
| ArachnoServer 3.0: an online resource for automated discovery, analysis and annotation of spider toxins SS Pineda, PA Chaumeil, A Kunert, Q Kaas, MWC Thang, L Le, M Nuhn, ... Bioinformatics 34 (6), 1074-1076, 2018 | 116 | 2018 |
| Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales SJ Low, M Džunková, PA Chaumeil, DH Parks, P Hugenholtz Nature microbiology 4 (8), 1306-1315, 2019 | 95 | 2019 |
| Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes M Chuvochina, AJ Mussig, PA Chaumeil, A Skarshewski, C Rinke, ... FEMS Microbiology Letters 370, fnad071, 2023 | 31 | 2023 |
| Genome Taxonomy Database and SeqCode: Microbial taxonomy and nomenclature in the age of big sequence data M Chuvochina, C Rinke, A Mussig, PA Chaumeil, D Parks, P Hugenholtz Biodiversity Information Science and Standards 7, e111135, 2023 | 3 | 2023 |
| Putative genome contamination has minimal impact on the GTDB taxonomy AJ Mussig, PA Chaumeil, M Chuvochina, C Rinke, DH Parks, ... Microbial Genomics 10 (5), 001256, 2024 | 1 | 2024 |
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandCorreu electrònic verificat a uq.edu.au