| Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species H Hezroni, D Koppstein, MG Schwartz, A Avrutin, DP Bartel, I Ulitsky Cell reports 11 (7), 1110-1122, 2015 | 678 | 2015 |
| Global analyses of the effect of different cellular contexts on microRNA targeting JW Nam, OS Rissland, D Koppstein, C Abreu-Goodger, CH Jan, ... Molecular cell 53 (6), 1031-1043, 2014 | 383 | 2014 |
| Extensive alternative polyadenylation during zebrafish development I Ulitsky, A Shkumatava, CH Jan, AO Subtelny, D Koppstein, GW Bell, ... Genome research 22 (10), 2054-2066, 2012 | 354 | 2012 |
| The RNA polymerase “switch region” is a target for inhibitors J Mukhopadhyay, K Das, S Ismail, D Koppstein, M Jang, B Hudson, ... Cell 135 (2), 295-307, 2008 | 283 | 2008 |
| Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ... IScience 24 (3), 2021 | 195 | 2021 |
| Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays A Agarwal, D Koppstein, J Rozowsky, A Sboner, L Habegger, LDW Hillier, ... BMC genomics 11, 1-16, 2010 | 165 | 2010 |
| Lymphoma driver mutations in the pathogenic evolution of an iconic human autoantibody M Singh, KJL Jackson, JJ Wang, P Schofield, MA Field, D Koppstein, ... Cell 180 (5), 878-894. e19, 2020 | 121 | 2020 |
| B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle S Rizzetto, DNP Koppstein, J Samir, M Singh, JH Reed, CH Cai, AR Lloyd, ... Bioinformatics 34 (16), 2846-2847, 2018 | 110 | 2018 |
| Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation D Koppstein, J Ashour, DP Bartel Nucleic acids research 43 (10), 5052-5064, 2015 | 104 | 2015 |
| Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention W Emanuel, M Kirstin, F Vedran, D Asija, GL Theresa, A Roberto, ... BioRxiv, 2020.05. 05.079194, 2020 | 93 | 2020 |
| The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression L Bujanic, O Shevchuk, N von Kügelgen, A Kalinina, K Ludwik, ... Rna 28 (5), 766-779, 2022 | 53 | 2022 |
| Sites of transcription initiation drive mRNA isoform selection C Alfonso-Gonzalez, I Legnini, S Holec, L Arrigoni, HC Ozbulut, F Mateos, ... Cell 186 (11), 2438-2455. e22, 2023 | 46 | 2023 |
| Tumor-infiltrating immune repertoires captured by single-cell barcoding in emulsion AW Briggs, SJ Goldfless, S Timberlake, BJ Belmont, CR Clouser, ... BioRxiv, 134841, 2017 | 30 | 2017 |
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| Single-cell sequencing reveals αβ chain pairing shapes the T cell repertoire K Grigaityte, JA Carter, SJ Goldfless, EW Jeffery, RJ Hause, Y Jiang, ... BioRxiv, 213462, 2017 | 26 | 2017 |
| Hpv-specific binding molecules C Brandt, B Belmont, C Borges, SM Burleigh, A Croft, SJ Goldfless, ... US Patent 11,952,408, 2024 | 15 | 2024 |
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| HPV-specific binding molecules J Sissons, C Brandt, A Croft, A Ebens, H Peper US Patent 11,072,660, 2021 | 5 | 2021 |
| Directed, unbiased mapping of lentiviral integrations with next generation sequencing in CAR-T cells TG Johnstone, R Chari, D Koppstein, RJ Hause, R Ponce, AW Briggs, ... Cancer Research 78 (13_Supplement), 1541-1541, 2018 | 1 | 2018 |
