| The contribution of historical processes to contemporary extinction risk in placental mammals AP Wilder, MA Supple, A Subramanian, A Mudide, R Swofford, ... Science 380 (6643), eabn5856, 2023 | 48 | 2023 |
| Opening the AI Black Box: Distilling Machine-Learned Algorithms into Code EJ Michaud, I Liao, V Lad, Z Liu, A Mudide, C Loughridge, ZC Guo, ... Entropy 26 (12), 1046, 2024 | 13* | 2024 |
| Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors R Singh*, AP Wu*, A Mudide*, B Berger Cell Systems 15 (5), 462-474. e5, 2024 | 8* | 2024 |
| DafnyBench: A Benchmark for Formal Software Verification C Loughridge, Q Sun, S Ahrenbach, F Cassano, C Sun, Y Sheng, ... TMLR 2025, 2024 | 6 | 2024 |
| Generation of LexA enhancer-trap lines in Drosophila by an international scholastic network ES Kim, A Rajan, K Chang, S Govindarajan, C Gulick, E English, ... G3: Genes, Genomes, Genetics 13 (9), jkad124, 2023 | 5 | 2023 |
| How much does the (social) environment matter? using artificial intelligence to predict COVID-19 outcomes with socio-demographic data CA Makridis, A Mudide, G Alterovitz BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 328-335, 2020 | 4 | 2020 |
| SARS-CoV-2 drug discovery based on intrinsically disordered regions A Mudide, G Alterovitz BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 131-142, 2020 | 3 | 2020 |
| Efficient dictionary learning with switch sparse autoencoders A Mudide, J Engels, EJ Michaud, M Tegmark, CS de Witt ICLR 2025, 2024 | 2 | 2024 |