| History, discovery, and classification of lncRNAs J Jarroux, A Morillon, M Pinskaya Long non coding RNA biology, 1-46, 2017 | 903 | 2017 |
| Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... Nature biotechnology 40 (7), 1082-1092, 2022 | 96 | 2022 |
| Accurate isoform discovery with IsoQuant using long reads AD Prjibelski, A Mikheenko, A Joglekar, A Smetanin, J Jarroux, ... Nature Biotechnology 41 (7), 915-918, 2023 | 86 | 2023 |
| HOTAIR lncRNA promotes epithelial–mesenchymal transition by redistributing LSD1 at regulatory chromatin regions J Jarroux, D Foretek, C Bertrand, M Gabriel, U Szachnowski, Z Saci, ... EMBO reports 22 (7), e50193, 2021 | 35 | 2021 |
| Long non coding RNA biology J Jarroux, A Morillon, M Pinskaya Adv. Exp. Med. Biol 1008, 1-46, 2017 | 32 | 2017 |
| The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing C Foord, J Hsu, J Jarroux, W Hu, N Belchikov, S Pollard, Y He, A Joglekar, ... nature methods 20 (1), 20-24, 2023 | 24 | 2023 |
| From words to complete phrases: insight into single-cell isoforms using short and long reads A Joglekar, C Foord, J Jarroux, S Pollard, HU Tilgner Transcription 14 (3-5), 92-104, 2023 | 12 | 2023 |
| Comparing 10x Genomics single-cell 3’and 5’assay in short-and long-read sequencing J Hsu, J Jarroux, A Joglekar, JP Romero, C Nemec, D Reyes, A Royall, ... BioRxiv, 2022.10. 27.514084, 2022 | 5 | 2022 |
| IsoQuant: a tool for accurate novel isoform discovery with long reads A Prjibelski, A Mikheenko, A Joglekar, A Smetanin, J Jarroux, A Lapidus, ... | 3 | 2022 |
| ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer’s Disease W Hu, C Foord, J Hsu, L Fan, MJ Corley, TN Bhatia, S Xu, N Belchikov, ... bioRxiv, 2024 | 2 | 2024 |
| Understanding isoform expression by pairing long-read sequencing with single-cell and spatial transcriptomics N Belchikov, J Hsu, XJ Li, J Jarroux, W Hu, A Joglekar, HU Tilgner Genome Research 34 (11), 1735-1746, 2024 | 1 | 2024 |
| Single-nuclei isoform RNA sequencing reveals combination patterns of transcript elements across human brain cell types SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... bioRxiv, 2021.12. 29.474385, 2021 | 1 | 2021 |
| Neuronal cell adhesion molecule (NRCAM) variant defined by microexon skipping is an essential, antigenically distinct, and targetable proteoform in high-grade glioma P Sehgal, AS Naqvi, M Higgins, J Liu, K Harvey, J Jarroux, T Kim, ... bioRxiv, 2025.01. 09.631916, 2025 | | 2025 |
| Nascent and Mature RNA Profiling by Subcellular M Pinskaya, J Jarroux, R Cipolla, A Morillon MRNA Decay: Methods and Protocols, 283, 2025 | | 2025 |
| Nascent and Mature RNA Profiling by Subcellular Fractionation in Human Cells M Pinskaya, J Jarroux, R Cipolla, A Morillon mRNA Decay: Methods and Protocols, 283-296, 2024 | | 2024 |
| DIS3 ribonuclease prevents the cytoplasmic accumulation of lncRNAs carrying non-canonical ORFs. D Foretek, M Gabriel, I Hatin, J Jarroux, M Pinskaya, E Pepermans, ... | | 2024 |
| Accumulation of lncRNAs in cytoplasm upon DIS3 depletion leads to production of cryptic peptides detected in Multiple Myeloma. D Foretek, M Gabriel, I Hatin, J Jarroux, M Pinskaya, E Pepermans, ... | | 2024 |
| DIS3 ribonuclease prevents the cytoplasmic accumulation of lncRNAs carrying non-canonical ORFs, which represent a source of cancer immunopeptides. D Foretek, M Gabriel, I Hatin, J Jarroux, M Pinskaya, E Pepermans, ... | | 2023 |
| Functional characterization of long non-coding RNAs associated with the epithelial-to-mesenchymal transition J Jarroux Université Paris sciences et lettres, 2019 | | 2019 |
| Caractérisation fonctionnelle des longs ARN non codants associés à la transition épithélio-mésenchymateuse| Theses. fr J Jarroux Paris Sciences et Lettres (ComUE), 2019 | | 2019 |
