| Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data MC Altman, D Rinchai, N Baldwin, M Toufiq, E Whalen, M Garand, ... Nature communications 12 (1), 4385, 2021 | 54 | 2021 |
| GSAn: an alternative to enrichment analysis for annotating gene sets A Ayllon-Benitez, R Bourqui, P Thébault, F Mougin NAR Genomics and Bioinformatics 2 (2), lqaa017, 2020 | 15 | 2020 |
| Prediction of solution properties and dynamics of RNAs by means of Brownian dynamics simulation of coarse-grained models: Ribosomal 5S RNA and phenylalanine transfer RNA AA Benítez, JG Hernandez Cifre, FG Diaz Banos, JG de la Torre BMC biophysics 8, 1-9, 2015 | 10 | 2015 |
| A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets A Ayllón-Benítez, F Mougin, J Allali, R Thiébaut, P Thébault PLoS One 13 (11), e0208037, 2018 | 6 | 2018 |
| Ontology Management in an Industrial Environment: The BASF Governance Operational Model for Ontologies (GOMO) A Iglesias-Molina, JA Bernabé-Díaz, P Deshmukh, PP Espinoza Arias, ... 2022 ISMB Bio-Ontologies, 2022 | 3 | 2022 |
| Deciphering gene sets annotations with ontology based visualization A Ayllón-Benítez, P Thébault, JT Fernández-Breis, M Quesada-Martínez, ... 2017 21st International Conference Information Visualisation (IV), 170-175, 2017 | 3 | 2017 |
| EPPO ontology: a semantic-driven approach for plant and pest codes representation A Ayllón-Benitez, JA Bernabé-Diaz, P Espinoza-Arias, ... Frontiers in Artificial Intelligence 6, 1131667, 2023 | 2 | 2023 |
| Development of a Fixed Repertoire of Blood Transcriptome Modules Based on Co-expression Patterns Across Immunological States M Altman, D Rinchai, N Baldwin, M Toufiq, E Whalen, M Garand, ... | | 2020 |
| Development of new computational methods for a synthetic gene set annotation A Ayllón-Benítez Université de Bordeaux, 2019 | | 2019 |
| GSAn: An alternative to gene set enrichment analysis A Ayllón-Benítez, P Thébault, F Mougin Journées Ouvertes de Biologie Informatique et Matématiques, 2019 | | 2019 |
| Deciphering functional annotation of multiple gene sets with MOTVIS A Ayllón-Benítez, F Mougin, MQ Martinez, JTF Breis, R Bourqui, ... Jornées ouvertes de biologie informatique et matematiques, 2018 | | 2018 |
