| pathfindR: an R package for comprehensive identification of enriched pathways in omics data through active subnetworks E Ulgen, O Ozisik, OU Sezerman Frontiers in genetics 10, 858, 2019 | 365 | 2019 |
| The Vroman effect: competitive protein exchange with dynamic multilayer protein aggregates SL Hirsh, DR McKenzie, NJ Nosworthy, JA Denman, OU Sezerman, ... Colloids and Surfaces B: Biointerfaces 103, 395-404, 2013 | 365 | 2013 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 271 | 2021 |
| Enhancing reuse of data and biological material in medical research: from FAIR to FAIR-health MM Th, M MartinGillian, SO Ugur, B van OmmenGertJan Biopreservation and biobanking, 2018 | 106 | 2018 |
| Molecular diversity of LysM carbohydrate-binding motifs in fungi GB Akcapinar, L Kappel, OU Sezerman, V Seidl-Seiboth Current genetics 61, 103-113, 2015 | 102 | 2015 |
| A new methodology to associate SNPs with human diseases according to their pathway related context B Bakir-Gungor, OU Sezerman PloS one 6 (10), e26277, 2011 | 80 | 2011 |
| A framework for validating AI in precision medicine: considerations from the European ITFoC consortium R Tsopra, X Fernandez, C Luchinat, L Alberghina, H Lehrach, M Vanoni, ... BMC medical informatics and decision making 21, 1-14, 2021 | 71 | 2021 |
| Prediction of peptides binding to MHC class I and II alleles by temporal motif mining C Meydan, HH Otu, OU Sezerman BMC bioinformatics 14, 1-11, 2013 | 66 | 2013 |
| RACK1 is an interaction partner of ATG5 and a novel regulator of autophagy S Erbil, O Oral, G Mitou, C Kig, E Durmaz-Timucin, E Guven-Maiorov, ... Journal of Biological Chemistry 291 (32), 16753-16765, 2016 | 63 | 2016 |
| MIR376A is a regulator of starvation-induced autophagy G Korkmaz, KA Tekirdag, DG Ozturk, A Kosar, OU Sezerman, D Gozuacik PLoS One 8 (12), e82556, 2013 | 61 | 2013 |
| Computational approaches for de novo design and redesign of metal-binding sites on proteins GB Akcapinar, OU Sezerman Bioscience Reports 37 (2), BSR20160179, 2017 | 47 | 2017 |
| CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis M Yousef, E Ülgen, OU Sezerman PeerJ Computer Science 7, e336, 2021 | 45 | 2021 |
| Application of automatic mutation–gene pair extraction to diseases M Erdogmus, OU Sezerman Journal of bioinformatics and computational biology 5 (06), 1261-1275, 2007 | 41 | 2007 |
| Identification of possible pathogenic pathways in Behçet’s disease using genome-wide association study data from two different populations B Bakir-Gungor, EF Remmers, A Meguro, N Mizuki, DL Kastner, A Gul, ... European Journal of Human Genetics 23 (5), 678-687, 2015 | 39 | 2015 |
| The conserved lid tryptophan, W211, potentiates thermostability and thermoactivity in bacterial thermoalkalophilic lipases E Timucin, OU Sezerman PLoS One 8 (12), e85186, 2013 | 36 | 2013 |
| SARS-CoV-2 isolation and propagation from Turkish COVID-19 patients C Taştan, B Yurtsever, G KARAKUŞ, DDİ KanÇaĞi, S Demir, S Abanuz, ... Turkish Journal of Biology 44 (7), 192-202, 2020 | 34 | 2020 |
| Global genetic cartography of urban metagenomes and anti-microbial resistance D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ... BioRxiv, 724526, 2019 | 34 | 2019 |
| Assessment of global and gene-specific DNA methylation in rat liver and kidney in response to non-genotoxic carcinogen exposure S Ozden, NT Kara, OU Sezerman, İM Durasi, T Chen, G Demirel, ... Toxicology and applied pharmacology 289 (2), 203-212, 2015 | 34 | 2015 |
| PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data B Bakir-Gungor, E Egemen, OU Sezerman Bioinformatics 30 (9), 1287-1289, 2014 | 34 | 2014 |
| IDH-mutant glioma specific association of rs55705857 located at 8q24. 21 involves MYC deregulation Y Oktay, E Ülgen, Ö Can, CB Akyerli, Ş Yüksel, Y Erdemgil, İM Durası, ... Scientific reports 6 (1), 27569, 2016 | 33 | 2016 |