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Jakob Russel
Jakob Russel
Senior Scientist, Cmbio
Correu electrònic verificat a clinical-microbiomics.com - Pàgina d'inici
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CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci
J Russel, R Pinilla-Redondo, D Mayo-Muñoz, SA Shah, SJ Sørensen
The CRISPR Journal 3 (6), 462-469, 2020
2052020
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
R Pinilla-Redondo, D Mayo-Muñoz, J Russel, RA Garrett, L Randau, ...
Nucleic Acids Research 48 (4), 2000-2012, 2020
2042020
Antagonism correlates with metabolic similarity in diverse bacteria
J Russel, HL Røder, JS Madsen, M Burmølle, SJ Sørensen
Proceedings of the National Academy of Sciences 114 (40), 10684-10688, 2017
1762017
Coexistence facilitates interspecific biofilm formation in complex microbial communities
JS Madsen, HL Røder, J Russel, H Sørensen, M Burmølle, SJ Sørensen
Environmental microbiology 18 (8), 2565-2574, 2016
1222016
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition
X Li, J Stokholm, A Brejnrod, GA Vestergaard, J Russel, U Trivedi, ...
Cell Host & Microbe, 2021
1032021
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
R Pinilla-Redondo, J Russel, D Mayo-Muñoz, SA Shah, RA Garrett, ...
Nucleic acids research 50 (8), 4315-4328, 2022
872022
Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil
M Schostag, A Priemé, S Jacquiod, J Russel, F Ekelund, CS Jacobsen
The ISME journal 13 (5), 1345-1359, 2019
822019
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
W Liu, S Jacquiod, A Brejnrod, J Russel, M Burmølle, SJ Sørensen
The ISME journal 13 (12), 3054-3066, 2019
812019
MicEco: Various functions for microbial community data
J Russel
R package version 0.9 15, 2021
75*2021
Low‐abundant species facilitates specific spatial organization that promotes multispecies biofilm formation
W Liu, J Russel, HL Røder, JS Madsen, M Burmølle, SJ Sørensen
Environmental microbiology 19 (7), 2893-2905, 2017
672017
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota
S Gupta, MH Hjelmsø, J Lehtimäki, X Li, MS Mortensen, J Russel, ...
Microbiome 8, 2020
482020
The developing airway and gut microbiota in early life is influenced by age of older siblings
ED Christensen, MH Hjelmsø, J Thorsen, S Shah, T Redgwell, ...
Microbiome 10 (1), 106, 2022
472022
DAtest: a framework for choosing differential abundance or expression method
J Russel, J Thorsen, AD Brejnrod, H Bisgaard, SJ Sørensen, M Burmølle
bioRxiv, 241802, 2018
462018
Micro-scale intermixing: A requisite for stable and synergistic co-establishment in a four-species biofilm
W Liu, J Russel, M Burmølle, SJ Sørensen, JS Madsen
The ISME journal 12 (8), 1940-1951, 2018
432018
Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs
S Camara-Wilpert, D Mayo-Muñoz, J Russel, RD Fagerlund, JS Madsen, ...
Nature 623 (7987), 601-607, 2023
422023
Enhanced bacterial mutualism through an evolved biofilm phenotype
HL Røder, J Herschend, J Russel, MF Andersen, JS Madsen, ...
The ISME journal 12 (11), 2608-2618, 2018
422018
Unexpected diversity among small-scale sample replicates of defined plant root compartments
S Attia, J Russel, MS Mortensen, JS Madsen, SJ Sørensen
The ISME journal 16 (4), 997-1003, 2022
372022
Different degrees of niche differentiation for bacteria, fungi, and myxomycetes within an elevational transect in the German Alps
M Borg Dahl, AD Brejnrod, J Russel, SJ Sørensen, M Schnittler
Microbial ecology 78, 764-780, 2019
282019
Biofilms can act as plasmid reserves in the absence of plasmid specific selection
HL Røder, U Trivedi, J Russel, KN Kragh, J Herschend, I Thalsø-Madsen, ...
npj Biofilms and Microbiomes 7 (1), 78, 2021
242021
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes
R Pinilla-Redondo, AK Olesen, J Russel, LE de Vries, LD Christensen, ...
mBio 12 (6), e03068-21, 2021
23*2021
En aquests moments el sistema no pot dur a terme l'operació. Torneu-ho a provar més tard.
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