Jordan M Eizenga

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Benedict PatenProfessor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaCorreu electrònic verificat a ucsc.edu
Erik GarrisonAssociate Professor, University of Tennessee Health Science CenterCorreu electrònic verificat a uthsc.edu
Glenn HickeyArenaria Inc.Correu electrònic verificat a arenaria.ca
Jouni SirénUC Santa Cruz Genomics InstituteCorreu electrònic verificat a ucsc.edu
Jean MonlongINSERM IRSD, Toulouse, FranceCorreu electrònic verificat a inserm.fr
Xian ChangUC Santa Cruz Genomics InstituteCorreu electrònic verificat a ucsc.edu
Miten JainAssistant Professor, Northeastern UniversityCorreu electrònic verificat a northeastern.edu
Andrew CarrollGoogleCorreu electrònic verificat a google.com
Pi-Chuan ChangGoogleCorreu electrònic verificat a google.com
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzCorreu electrònic verificat a soe.ucsc.edu
Richard DurbinDept of Genetics, University of CambridgeCorreu electrònic verificat a cam.ac.uk
Adam M NovakSenior Software Engineer, UC Santa Cruz Genomics Institute, Computational Genomics LaboratoryCorreu electrònic verificat a soe.ucsc.edu
Yohei RosenNYU School of Medicine/UC Santa Cruz Genomics InstituteCorreu electrònic verificat a ucsc.edu
Kishwar ShafinResearch Scientist, GoogleCorreu electrònic verificat a google.com
Mark AkesonProfessor of Biomolecular Engineering, UC Santa CruzCorreu electrònic verificat a soe.ucsc.edu
Santiago Marco-SolaBarcelona Supercomputing Center (BSC)Correu electrònic verificat a bsc.es
Jonas Andreas Sibbesen

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Jordan M Eizenga

Postdoctoral Researcher, Genomics Institute, University of California Santa Cruz

Correu electrònic verificat a ucsc.edu

Bioinformatics Pangenomics Computational Genomics


Títol Ordena per cites Ordena per any Ordena per títol	Citada per Citada per	Any
Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018	648	2018
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023	618	2023
Mapping DNA methylation with high-throughput nanopore sequencing AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ... Nature methods 14 (4), 411-413, 2017	504	2017
Genome graphs and the evolution of genome inference B Paten, AM Novak, JM Eizenga, E Garrison Genome research 27 (5), 665-676, 2017	349	2017
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21 (1), 139-162, 2020	250	2020
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Science 374 (6574), abg8871, 2021	235	2021
Genotyping structural variants in pangenome graphs using the vg toolkit G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ... Genome biology 21, 1-17, 2020	232	2020
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021	208	2021
Pangenome graph construction from genome alignments with Minigraph-Cactus G Hickey, J Monlong, J Ebler, AM Novak, JM Eizenga, Y Gao, T Marschall, ... Nature biotechnology 42 (4), 663-673, 2024	146	2024
Superbubbles, ultrabubbles, and cacti B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey Journal of Computational Biology 25 (7), 649-663, 2018	80	2018
Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... BioRxiv, 101378, 2017	58	2017
Optimal gap-affine alignment in O(s) space S Marco-Sola, JM Eizenga, A Guarracino, B Paten, E Garrison, M Moreto Bioinformatics 39 (2), btad074, 2023	54	2023
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs JA Sibbesen, JM Eizenga, AM Novak, J Sirén, X Chang, E Garrison, ... Nature Methods 20 (2), 239-247, 2023	43	2023
A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures SH Vohr, R Gordon, JM Eizenga, HA Erlich, CD Calloway, RE Green Forensic Science International: Genetics 30, 93-105, 2017	43	2017
Efficient dynamic variation graphs JM Eizenga, AM Novak, E Kobayashi, F Villani, C Cisar, S Heumos, ... Bioinformatics 36 (21), 5139-5144, 2020	39	2020
Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... BioRxiv, 2021.03. 04.433952, 2021	35	2021
Aerosol microbiome over the Mediterranean Sea diversity and abundance E Mescioglu, E Rahav, N Belkin, P Xian, JM Eizenga, A Vichik, B Herut, ... Atmosphere 10 (8), 440, 2019	31	2019
Sequence variation aware genome references and read mapping with the variation graph toolkit E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... BioRxiv, 234856, 2017	31	2017
Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome research 33 (4), 496-510, 2023	30	2023
Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... BioRxiv, 2020.12. 04.412486, 2020	27	2020

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