Alexandre Almeida

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Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDCorreu electrònic verificat a ebi.ac.uk
Trevor D LawleyWellcome Trust Sanger InstituteCorreu electrònic verificat a sanger.ac.uk
Samuel C ForsterHudson Institute of Medical ResearchCorreu electrònic verificat a hudson.org.au
Hilary P BrowneUniversity College CorkCorreu electrònic verificat a ucc.ie
Cynthia Maria ChibaniInstitute for General Microbiology, CAU KielCorreu electrònic verificat a ifam.uni-kiel.de
Nicola SegataDepartment CIBIO, University of TrentoCorreu electrònic verificat a unitn.it
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFCorreu electrònic verificat a gladstone.ucsf.edu
Donovan ParksUniversity of QueenslandCorreu electrònic verificat a uq.edu.au
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandCorreu electrònic verificat a uq.edu.au
Stephen NayfachProfluent BioCorreu electrònic verificat a profluent.bio
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryCorreu electrònic verificat a lbl.gov
Julia A SegreSenior Investigator, NHGRI, NIHCorreu electrònic verificat a nhgri.nih.gov
Sara Saheb KashafCorreu electrònic verificat a uchicago.edu
Greg GloorProfessor and Chair of Biochemistry, University of Western Ontario, Western UniversityCorreu electrònic verificat a uwo.ca
Yan ShaoWellcome Sanger InstituteCorreu electrònic verificat a sanger.ac.uk
kevin vervierNovartis - Advanced Quantitative ScienceCorreu electrònic verificat a novartis.com
Diana M. ProctorUniversity of Texas Health Science Center at Houston | McGovern Medical SchoolCorreu electrònic verificat a uth.tmc.edu
Tapoka T. MkandawireThe Francis Crick InstituteCorreu electrònic verificat a crick.ac.uk
simonetta gribaldoInsitut PasteurCorreu electrònic verificat a pasteur.fr
Luis Fernando Camarillo-GuerreroSenior Bioinformatics Scientist at ModernaCorreu electrònic verificat a modernatx.com

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Alexandre Almeida

University of Cambridge

Correu electrònic verificat a cam.ac.uk - Pàgina d'inici

Bioinformatics Genomics Human microbiome Microbiology Phylogenetics


Títol Ordena per cites Ordena per any Ordena per títol	Citada per Citada per	Any
A new genomic blueprint of the human gut microbiota A Almeida, AL Mitchell, M Boland, SC Forster, GB Gloor, A Tarkowska, ... Nature 568 (7753), 499-504, 2019	1319	2019
A unified catalog of 204,938 reference genomes from the human gut microbiome A Almeida, S Nayfach, M Boland, F Strozzi, M Beracochea, ZJ Shi, ... Nature Biotechnology 39, 105–114, 2021	1032	2021
MGnify: the microbiome analysis resource in 2020 AL Mitchell, A Almeida, M Beracochea, M Boland, J Burgin, G Cochrane, ... Nucleic Acids Research 48 (D1), D570-D578, 2020	617	2020
A human gut bacterial genome and culture collection for improved metagenomic analyses SC Forster, N Kumar, BO Anonye, A Almeida, E Viciani, MD Stares, ... Nature Biotechnology 37 (2), 186-192, 2019	549	2019
Massive expansion of human gut bacteriophage diversity LF Camarillo-Guerrero, A Almeida, G Rangel-Pineros, RD Finn, ... Cell 184 (4), 1098-1109.e9, 2021	492	2021
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature Communications 10 (1), 1014, 2019	444	2019
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in Bioinformatics, bbaa232, 2021	162	2021
Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments A Almeida, AL Mitchell, A Tarkowska, RD Finn GigaScience 7 (5), 2018	138	2018
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions S Saheb Kashaf, DM Proctor, C Deming, P Saary, M Hölzer, ME Taylor, ... Nature Microbiology 7, 169-179, 2022	133	2022
A catalogue of 1,167 genomes from the human gut archaeome CM Chibani, A Mahnert, G Borrel, A Almeida, A Werner, JF Brugère, ... Nature Microbiology 7, 48–61, 2022	131	2022
The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping BS Beresford-Jones, SC Forster, MD Stares, G Notley, E Viciani, ... Cell Host & Microbe 30, 124-138.e8, 2022	114	2022
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli Y Wang, JM Huang, YL Zhou, A Almeida, RD Finn, A Danchin, LS He BMC Genomics 21, 408, 2020	94	2020
A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome S Zeng, D Patangia, A Almeida, Z Zhou, D Mu, R Paul Ross, C Stanton, ... Nature Communications 13 (1), 5139, 2022	62	2022
The Bacteroidetes Aequorivita sp. and Kaistella jeonii produce promiscuous esterases with PET-hydrolyzing activity H Zhang, P Pérez-García, RF Dierkes, V Applegate, J Schumacher, ... Frontiers in Microbiology 12, 3874, 2022	60*	2022
Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle HP Browne, A Almeida, N Kumar, K Vervier, AT Adoum, E Viciani, ... Genome Biology 22, 204, 2021	54	2021
Persistence of a dominant bovine lineage of group B Streptococcus reveals genomic signatures of host adaptation A Almeida, C Alves‐Barroco, E Sauvage, R Bexiga, P Albuquerque, ... Environmental Microbiology 18 (11), 4216-4229, 2016	47	2016
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data SS Kashaf, A Almeida, JA Segre, RD Finn Nature Protocols 16 (5), 2520-2541, 2021	42	2021
Baseline gut microbiota composition is associated with Schistosoma mansoni infection burden in rodent models A Cortes, S Clare, A Costain, A Almeida, C McCarthy, K Harcourt, ... Frontiers in Immunology, 2020	40	2020
Staphylococcal diversity in atopic dermatitis from an individual to a global scale SS Kashaf, CP Harkins, C Deming, P Joglekar, S Conlan, CJ Holmes, ... Cell Host & Microbe 31 (4), 578-592. e6, 2023	39	2023
MGnify genomes: a resource for biome-specific microbial genome catalogues TA Gurbich, A Almeida, M Beracochea, T Burdett, J Burgin, G Cochrane, ... Journal of Molecular Biology 435 (14), 168016, 2023	36	2023

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