Edoardo Pasolli

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Nicola SegataDepartment CIBIO, University of TrentoCorreu electrònic verificat a unitn.it
Adrian TettUniversity of ViennaCorreu electrònic verificat a univie.ac.at
Francesco AsnicarDepartment CIBIO, University of TrentoCorreu electrònic verificat a unitn.it
Danilo ErcoliniProfessor of Microbiology University of Naples Federico IICorreu electrònic verificat a unina.it
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthCorreu electrònic verificat a hsph.harvard.edu
Paolo ManghiResearcher, Edmund Mach Foundation, Unit of Computational BiologyCorreu electrònic verificat a unitn.it
Moreno ZolfoOkinawa Institute of Science and Technology - OISTCorreu electrònic verificat a oist.jp
Francesca De FilippisDepartment of Agricultural Sciences, University of Naples Federico IICorreu electrònic verificat a unina.it
Duy Tin TruongUniversity of TrentoCorreu electrònic verificat a unitn.it
Serena ManaraDepartment CIBIO, University of TrentoCorreu electrònic verificat a unitn.it
Francesco BeghiniYale UniversityCorreu electrònic verificat a yale.edu
Matthias ScholzEdmund Mach FoundationCorreu electrònic verificat a fmach.it
Paolo GhensiCIBIO - Università degli Studi di TrentoCorreu electrònic verificat a unitn.it
Fabio CumboCenter for Computational Life Sciences, Lerner Research Institute, Cleveland ClinicCorreu electrònic verificat a ccf.org
Nicolai KarcherPostdoc, EMBL HeidelbergCorreu electrònic verificat a embl.de
CARMEN COLLADOIATA-CSICCorreu electrònic verificat a iata.csic.es
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public HealthCorreu electrònic verificat a hsph.harvard.edu
Timothy TickleHead of Scientific Partnerships, Data Sciences Platform, Broad InstituteCorreu electrònic verificat a broadinstitute.org
Mattia BolzanPrebiomics srlCorreu electrònic verificat a prebiomics.com
Devis TuiaEcole Polytechnique Fédérale de Lausanne (EPFL)Correu electrònic verificat a epfl.ch

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Edoardo Pasolli

Department of Agricultural Sciences, University of Naples Federico II

Correu electrònic verificat a unina.it - Pàgina d'inici

Machine learning Metagenomics Microbiome


Títol Ordena per cites Ordena per any Ordena per títol	Citada per Citada per	Any
MetaPhlAn2 for Enhanced Metagenomic Taxonomic Profiling DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ... Nature Methods 12 (10), 902-903, 2015	2170	2015
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 2019	1402	2019
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome P Ferretti, E Pasolli, A Tett, F Asnicar*, V Gorfer, S Fedi, F Armanini, ... Cell Host & Microbe 24 (1), 133-145. e5, 2018	1189	2018
Metagenomic Analysis of Colorectal Cancer Datasets Identifies Cross-Cohort Microbial Diagnostic Signatures and a Link with Choline Degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature Medicine 25, 667-678, 2019	825	2019
Microbial Strain-Level Population Structure and Genetic Diversity from Metagenomes DT Truong, A Tett, E Pasolli, C Huttenhower, N Segata Genome Research 27 (4), 626-638, 2017	743	2017
Machine Learning Meta-Analysis of Large Metagenomic Datasets: Tools and Biological Insights E Pasolli, DT Truong, F Malik, L Waldron, N Segata PLoS Computational Biology 12 (7), e1004977, 2016	592	2016
Precise Phylogenetic Analysis of Microbial Isolates and Genomes from Metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature Communications 11 (1), 1-10, 2020	558*	2020
Extending and Improving Metagenomic Taxonomic Profiling with Uncharacterized Species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology, 1-12, 2023	535	2023
Mediterranean Diet Intervention in Overweight and Obese Subjects Lowers Plasma Cholesterol and Causes Changes in the Gut Microbiome and Metabolome Independently of Energy Intake V Meslier, M Laiola, HM Roager, F De Filippis, H Roume, B Quinquis, ... Gut, 2020	488	2020
Prevotella Diversity, Niches and Interactions with the Human Host A Tett, E Pasolli, G Masetti, D Ercolini, N Segata Nature Reviews Microbiology, 1-15, 2021	462	2021
Accessible, Curated Metagenomic Data through ExperimentHub E Pasolli, L Schiffer, P Manghi*, A Renson, V Obenchain, DT Truong, ... Nature Methods 14 (11), 1023-1024, 2017	441	2017
Strain-Level Microbial Epidemiology and Population Genomics from Shotgun Metagenomics M Scholz, DV Ward, E Pasolli*, T Tolio, M Zolfo, F Asnicar, DT Truong, ... Nature Methods 13 (5), 435-438, 2016	440	2016
Strain-level Analysis of Mother-to-Child Bacterial Transmission During the First Few Months of Life M Yassour, E Jason, LJ Hogstrom, TD Arthur, S Tripathi, H Siljander, ... Cell Host & Microbe 24 (1), 146-154. e4, 2018	431	2018
The Prevotella Copri Complex Comprises Four Distinct Clades That Are Underrepresented in Westernised Populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell Host & Microbe 26 (5), 666-679.e7, 2019	400	2019
Distinct Genetic and Functional Traits of Human Intestinal Prevotella Copri Strains are Associated with Different Habitual Diets F De Filippis, E Pasolli, A Tett, S Tarallo, A Naccarati, M De Angelis, ... Cell Host & Microbe 25 (3), 444-453. e3, 2019	338	2019
Maternal Inheritance of Bifidobacterial Communities and Bifidophages in Infants through Vertical Transmission S Duranti, GA Lugli, L Mancabelli, F Armanini, F Turroni, K James, ... Microbiome 5 (1), 66, 2017	324	2017
Automatic Analysis of GPR Images: A Pattern-Recognition Approach E Pasolli, F Melgani, M Donelli IEEE Transactions on Geoscience and Remote Sensing 47 (7), 2206-2217, 2009	315	2009
Cross-Reactivity Between Tumor MHC Class I–Restricted Antigens and an Enterococcal Bacteriophage A Fluckiger, R Daillère, M Sassi, BS Sixt, P Liu, F Loos, C Richard, ... Science 369 (6506), 936-942, 2020	297	2020
Gut Bacteria Composition Drives Primary Resistance to Cancer Immunotherapy in Renal Cell Carcinoma Patients L Derosa, B Routy, M Fidelle, V Iebba, L Alla, E Pasolli, N Segata, ... European Urology 78 (2), 195-206, 2020	292	2020
Large-Scale Genome-Wide Analysis Links Lactic Acid Bacteria from Food with the Gut Microbiome E Pasolli, F De Filippis, IE Mauriello, F Cumbo, AM Walsh, J Leech, ... Nature Communications 11 (1), 1-12, 2020	284	2020

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