| Collision induced unfolding of isolated proteins in the gas phase: past, present, and future SM Dixit, DA Polasky, BT Ruotolo Current opinion in chemical biology 42, 93-100, 2018 | 256 | 2018 |
| Fast quantitative analysis of timsTOF PASEF data with MSFragger and IonQuant F Yu, SE Haynes, GC Teo, DM Avtonomov, DA Polasky, AI Nesvizhskii Molecular & Cellular Proteomics 19 (9), 1575-1585, 2020 | 245 | 2020 |
| Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco DA Polasky, F Yu, GC Teo, AI Nesvizhskii Nature Methods, 2020 | 215 | 2020 |
| Glycoproteomics I Bagdonaite, SA Malaker, DA Polasky, NM Riley, K Schjoldager, ... Nature Reviews Methods Primers 2 (1), 48, 2022 | 167 | 2022 |
| Fast deisotoping algorithm and its implementation in the MSFragger search engine GC Teo, DA Polasky, F Yu, AI Nesvizhskii Journal of proteome research 20 (1), 498-505, 2020 | 156 | 2020 |
| CIUSuite 2: next-generation software for the analysis of gas-phase protein unfolding data DA Polasky, SM Dixit, SM Fantin, BT Ruotolo Analytical chemistry 91 (4), 3147-3155, 2019 | 139 | 2019 |
| Variable-velocity traveling-wave ion mobility separation enhancing peak capacity for data-independent acquisition proteomics SE Haynes, DA Polasky, SM Dixit, JD Majmudar, K Neeson, BT Ruotolo, ... Analytical chemistry 89 (11), 5669-5672, 2017 | 98 | 2017 |
| A modified drift tube ion mobility-mass spectrometer for charge-multiplexed collision-induced unfolding DD Vallejo, DA Polasky, RT Kurulugama, JD Eschweiler, JC Fjeldsted, ... Analytical chemistry 91 (13), 8137-8146, 2019 | 51 | 2019 |
| Collision induced unfolding classifies ligands bound to the integral membrane translocator protein SM Fantin, KF Parson, S Niu, J Liu, DA Polasky, SM Dixit, ... Analytical chemistry 91 (24), 15469-15476, 2019 | 49 | 2019 |
| Multiattribute glycan identification and FDR control for glycoproteomics DA Polasky, DJ Geiszler, F Yu, AI Nesvizhskii Molecular & Cellular Proteomics 21 (3), 2022 | 31 | 2022 |
| Collision-induced unfolding reveals stability differences in infliximab therapeutics under native and heat stress conditions DD Vallejo, J Kang, J Coghlan, CR Ramírez, DA Polasky, RT Kurulugama, ... Analytical Chemistry 93 (48), 16166-16174, 2021 | 30 | 2021 |
| Recent advances in computational algorithms and software for large-scale glycoproteomics DA Polasky, AI Nesvizhskii Current Opinion in Chemical Biology 72, 102238, 2023 | 29 | 2023 |
| Enhancing cysteine chemoproteomic coverage through systematic assessment of click chemistry product fragmentation T Yan, AB Palmer, DJ Geiszler, DA Polasky, LM Boatner, NR Burton, ... Analytical Chemistry 94 (9), 3800-3810, 2022 | 27 | 2022 |
| MSFragger-labile: a flexible method to improve labile PTM analysis in proteomics DA Polasky, DJ Geiszler, F Yu, K Li, GC Teo, AI Nesvizhskii Molecular & Cellular Proteomics 22 (5), 2023 | 25 | 2023 |
| Fixed-charge trimethyl pyrilium modification for enabling enhanced top-down mass spectrometry sequencing of intact protein complexes DA Polasky, F Lermyte, M Nshanian, F Sobott, PC Andrews, JA Loo, ... Analytical chemistry 90 (4), 2756-2764, 2018 | 25 | 2018 |
| Pervasive charge solvation permeates native-like protein ions and dramatically influences top-down sequencing data DA Polasky, SM Dixit, MF Keating, VV Gadkari, PC Andrews, BT Ruotolo Journal of the American Chemical Society 142 (14), 6750-6760, 2020 | 22 | 2020 |
| Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides DJ Geiszler, DA Polasky, F Yu, AI Nesvizhskii Nature Communications 14 (1), 4132, 2023 | 20 | 2023 |
| An Algorithm for Building Multi-State Classifiers Based on Collision-Induced Unfolding Data DA Polasky, SM Dixit, DD Vallejo, KD Kulju, BT Ruotolo Analytical chemistry 91 (16), 10407-10412, 2019 | 19 | 2019 |
| Ion mobility-mass spectrometry coupled to droplet microfluidics for rapid protein structure analysis and drug discovery CI D’Amico, DA Polasky, DJ Steyer, BT Ruotolo, RT Kennedy Analytical Chemistry 94 (38), 13084-13091, 2022 | 18 | 2022 |
| Imtbx and grppr: software for top-down proteomics utilizing ion mobility-mass spectrometry DM Avtonomov, DA Polasky, BT Ruotolo, AI Nesvizhskii Analytical chemistry 90 (3), 2369-2375, 2018 | 18 | 2018 |
