| Midbrain-like organoids from human pluripotent stem cells contain functional dopaminergic and neuromelanin-producing neurons J Jo, Y Xiao, AX Sun, E Cukuroglu, HD Tran, J Göke, ZY Tan, TY Saw, ... Cell stem cell 19 (2), 248-257, 2016 | 809 | 2016 |
| PRISM: a web server and repository for prediction of protein–protein interactions and modeling their 3D complexes A Baspinar, E Cukuroglu, R Nussinov, O Keskin, A Gursoy Nucleic acids research 42 (W1), W285-W289, 2014 | 224 | 2014 |
| A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters D Demircioğlu, E Cukuroglu, M Kindermans, T Nandi, C Calabrese, ... Cell 178 (6), 1465-1477. e17, 2019 | 194 | 2019 |
| Hot spots in protein–protein interfaces: Towards drug discovery E Cukuroglu, HB Engin, A Gursoy, O Keskin Progress in biophysics and molecular biology 116 (2-3), 165-173, 2014 | 190 | 2014 |
| Tumor-associated B cells and humoral immune response in head and neck squamous cell carcinoma A Lechner, HA Schlößer, M Thelen, K Wennhold, SI Rothschild, R Gilles, ... Oncoimmunology 8 (3), 1535293, 2019 | 138 | 2019 |
| HotRegion: a database of predicted hot spot clusters E Cukuroglu, A Gursoy, O Keskin Nucleic acids research 40 (D1), D829-D833, 2012 | 114 | 2012 |
| Molecular features underlying neurodegeneration identified through in vitro modeling of genetically diverse Parkinson’s disease patients L Lin, J Göke, E Cukuroglu, MR Dranias, AMJ VanDongen, LW Stanton Cell reports 15 (11), 2411-2426, 2016 | 108 | 2016 |
| Non-redundant unique interface structures as templates for modeling protein interactions E Cukuroglu, A Gursoy, R Nussinov, O Keskin PloS one 9 (1), e86738, 2014 | 89 | 2014 |
| SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements DV Do, B Strauss, E Cukuroglu, I Macaulay, KB Wee, TX Hu, RDLM Igor, ... Cell discovery 4 (1), 33, 2018 | 61 | 2018 |
| B cells in esophago-gastric adenocarcinoma are highly differentiated, organize in tertiary lymphoid structures and produce tumor-specific antibodies HA Schlößer, M Thelen, A Lechner, K Wennhold, MA Garcia-Marquez, ... Oncoimmunology 8 (1), e1512458, 2019 | 60 | 2019 |
| Analysis of hot region organization in hub proteins E Cukuroglu, A Gursoy, O Keskin Annals of biomedical engineering 38, 2068-2078, 2010 | 39 | 2010 |
| Histone modifications and p53 binding poise the p21 promoter for activation in human embryonic stem cells Y Itahana, J Zhang, J Göke, LA Vardy, R Han, K Iwamoto, E Cukuroglu, ... Scientific Reports 6 (1), 28112, 2016 | 35 | 2016 |
| A chemically defined feeder-free system for the establishment and maintenance of the human naive pluripotent state I Szczerbinska, KAU Gonzales, E Cukuroglu, MNB Ramli, BPG Lee, ... Stem Cell Reports 13 (4), 612-626, 2019 | 34 | 2019 |
| EZH2 promotes neoplastic transformation through VAV interaction-dependent extranuclear mechanisms N Venkatesan, JF Wong, KP Tan, HH Chung, YH Yau, E Cukuroglu, ... Oncogene 37 (4), 461-477, 2018 | 25 | 2018 |
| Enriching traditional protein-protein interaction networks with alternative conformations of proteins F Halakou, ES Kilic, E Cukuroglu, O Keskin, A Gursoy Scientific Reports 7 (1), 7180, 2017 | 24 | 2017 |
| Go ̈ ke, J., Tan, ZY, Saw, TY, Tan, C.-P., Lokman, H. et al.(2016). Midbrain-like organoids from human pluripotent stem cells contain functional dopaminergic and … J Jo, Y Xiao, AX Sun, E Cukuroglu, HD Tran Cell Stem Cell 19, 248-257, 0 | 18 | |
| An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets F Schmidt, M List, E Cukuroglu, S Köhler, J Göke, MH Schulz Bioinformatics 34 (17), i908-i916, 2018 | 16 | 2018 |
| WNT signalling control by KDM5C during development affects cognition V Karwacki-Neisius, A Jang, E Cukuroglu, A Tai, A Jiao, D Predes, J Yoon, ... Nature 627 (8004), 594-603, 2024 | 7 | 2024 |
| A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters D Demircioğlu, M Kindermans, T Nandi, E Cukuroglu, C Calabrese, ... | 6* | 2017 |
| Disrupting interactions between β-catenin and activating TCFs reconstitutes ground state pluripotency in mouse embryonic stem cells A Saj, SS Chatterjee, B Zhu, E Cukuroglu, T Gocha, X Zhang, J Göke, ... Stem Cells 35 (8), 1924-1933, 2017 | 4 | 2017 |