| Unifying phylogenetic birth–death models in epidemiology and macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell Systematic Biology 71 (1), 172-189, 2022 | 51 | 2022 |
| Fundamental identifiability limits in molecular epidemiology S Louca, A McLaughlin, A MacPherson, JB Joy, MW Pennell Molecular biology and evolution 38 (9), 4010-4024, 2021 | 45 | 2021 |
| Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada A McLaughlin, V Montoya, RL Miller, GJ Mordecai, C COVID, M Worobey, ... Elife 11, e73896, 2022 | 27 | 2022 |
| Avian influenza viruses in wild birds in Canada following incursions of highly pathogenic H5N1 virus from Eurasia in 2021–2022 JA Giacinti, AV Signore, MEB Jones, L Bourque, S Lair, C Jardine, ... Mbio 15 (8), e03203-23, 2024 | 14 | 2024 |
| Impact of SARS-CoV-2 lockdown on expansion of HIV transmission clusters among key populations: A retrospective phylogenetic analysis RL Miller, A McLaughlin, V Montoya, J Toy, S Stone, J Harding, RH Liang, ... The Lancet Regional Health–Americas 16, 2022 | 14 | 2022 |
| Detection of HIV transmission hotspots in British Columbia, Canada: a novel framework for the prioritization and allocation of treatment and prevention resources A McLaughlin, P Sereda, N Oliveira, R Barrios, CJ Brumme, ZL Brumme, ... EBioMedicine 48, 405-413, 2019 | 12 | 2019 |
| Variable routes to genomic and host adaptation among coronaviruses V Montoya, A McLaughlin, GJ Mordecai, RL Miller, JB Joy Journal of Evolutionary Biology 34 (6), 924-936, 2021 | 8 | 2021 |
| Concordance of HIV transmission risk factors elucidated using viral diversification rate and phylogenetic clustering A McLaughlin, P Sereda, CJ Brumme, ZL Brumme, R Barrios, ... Evolution, Medicine, and Public Health 9 (1), 338-348, 2021 | 8 | 2021 |
| A general birth-death-sampling model for epidemiology and macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell bioRxiv, 2020.10. 10.334383, 2020 | 8 | 2020 |
| Early and ongoing importations of SARS-CoV-2 in Canada A McLaughlin, V Montoya, RL Miller, GJ Mordecai, M Worobey, AFY Poon, ... Medrxiv, 2021.04. 09.21255131, 2021 | 7 | 2021 |
| Phylogenetic prioritization of HIV-1 transmission clusters with viral lineage-level diversification rates RL Miller, A McLaughlin, RH Liang, J Harding, J Wong, AQ Le, ... Evolution, medicine, and public health 10 (1), 305-315, 2022 | 4 | 2022 |
| Spatiotemporal patterns of low and highly pathogenic avian influenza virus prevalence in murres in Canada from 2007 to 2022—a case study for wildlife viral monitoring A McLaughlin, J Giacinti, I Rahman, J Wight, K Hargan, AS Lang, ... FACETS 9, 1-13, 2024 | 1 | 2024 |
| Impact of pre-exposure prophylaxis on HIV-1 drug resistance and phylogenetic cluster growth in British Columbia, Canada A McLaughlin, KJ Toy, V Montoya, P Sereda, J Triggs, M Hull, CJ Brumme, ... medRxiv, 2024.09. 06.24313187, 2024 | | 2024 |
| Phylogenetic inference of the transmission and migration dynamics of SARS-CoV-2 and HIV-1 in Canada A McLaughlin University of British Columbia, 2024 | | 2024 |
| Effectiveness of Canadian travel restrictions in reducing burden of SARS-CoV-2 variants of concern A McLaughlin, V Montoya, RL Miller, ... medRxiv, 2023.09. 12.23294140, 2023 | | 2023 |
| Epidemiological Correlates of HIV Lineage-Level Diversification Rate A McLaughlin | | 2019 |
| Applying phylogenetic lineage-level diversification rate to infer epidemiological risk factors and spatiotemporal distribution of HIV transmission in British Columbia A McLaughlin University of British Columbia, 2019 | | 2019 |
| Course: EOSC 475/ResearchProject/Metatranscriptomics A McLaughlin | | |
| A General Birth-Death-Sampling Model for Epidemiology and Macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell | | |
| A Phylogenetic Approach to Prioritizing HIV Transmission Clusters J Joy, A McLaughlin, RH Liang, J Choi, CJ Brumme, JSG Montaner | | |