| Cross-resistance to cefiderocol and ceftazidime–avibactam in KPC β-lactamase mutants and the inoculum effect CA Hobson, A Cointe, H Jacquier, A Choudhury, M Magnan, C Courroux, ... Clinical Microbiology and Infection 27 (8), 1172. e7-1172. e10, 2021 | 85 | 2021 |
| A cell‐free expression and purification process for rapid production of protein biologics CJ Sullivan, ED Pendleton, HH Sasmor, WL Hicks, JB Farnum, M Muto, ... Biotechnology journal 11 (2), 238-248, 2016 | 83 | 2016 |
| Iterative genome editing of Escherichia coli for 3-hydroxypropionic acid production R Liu, L Liang, A Choudhury, MC Bassalo, AD Garst, K Tarasava, RT Gill Metabolic Engineering 47, 303-313, 2018 | 50 | 2018 |
| Deep scanning lysine metabolism in Escherichia coli MC Bassalo, AD Garst, A Choudhury, WC Grau, EJ Oh, E Spindler, ... Molecular Systems Biology 14 (11), e8371, 2018 | 44 | 2018 |
| Directed combinatorial mutagenesis of Escherichia coli for complex phenotype engineering R Liu, L Liang, AD Garst, A Choudhury, VS i Nogué, GT Beckham, RT Gill Metabolic Engineering 47, 10-20, 2018 | 42 | 2018 |
| CRISPR/Cas9 recombineering‐mediated deep mutational scanning of essential genes in Escherichia coli A Choudhury, JA Fenster, RG Fankhauser, JL Kaar, O Tenaillon, RT Gill Molecular Systems Biology 16 (3), e9265, 2020 | 38 | 2020 |
| KPC beta-lactamases are permissive to insertions and deletions conferring substrate spectrum modifications and resistance to ceftazidime-avibactam CA Hobson, S Bonacorsi, H Jacquier, A Choudhury, M Magnan, A Cointe, ... Antimicrobial Agents and Chemotherapy 64 (12), 10.1128/aac. 01175-20, 2020 | 35 | 2020 |
| Multiplex navigation of global regulatory networks (MINR) in yeast for improved ethanol tolerance and production R Liu, L Liang, A Choudhury, AD Garst, CA Eckert, EJ Oh, J Winkler, ... Metabolic engineering 51, 50-58, 2019 | 34 | 2019 |
| Small molecule regulated sgRNAs enable control of genome editing in E. coli by Cas9 RS Iwasaki, BA Ozdilek, AD Garst, A Choudhury, RT Batey Nature Communications 11 (1), 1394, 2020 | 31 | 2020 |
| Engineering regulatory networks for complex phenotypes in E. coli R Liu, L Liang, EF Freed, A Choudhury, CA Eckert, RT Gill Nature Communications 11 (1), 4050, 2020 | 27 | 2020 |
| Evaluating fermentation effects on cell growth and crude extract metabolic activity for improved yeast cell-free protein synthesis A Choudhury, CE Hodgman, MJ Anderson, MC Jewett Biochemical engineering journal 91, 140-148, 2014 | 27 | 2014 |
| Yeast knockout library allows for efficient testing of genomic mutations for cell-free protein synthesis JA Schoborg, LG Clark, A Choudhury, CE Hodgman, MC Jewett Synthetic and Systems Biotechnology 1 (1), 2-6, 2016 | 25 | 2016 |
| Lytic Polysaccharide Monooxygenases ScLPMO10B and ScLPMO10C Are Stable in Ionic Liquids As Determined by Molecular Simulations KG Sprenger, A Choudhury, JL Kaar, J Pfaendtner The Journal of Physical Chemistry B 120 (16), 3863-3872, 2016 | 23 | 2016 |
| The Resistome: A Comprehensive Database of Escherichia coli Resistance Phenotypes JD Winkler, AL Halweg-Edwards, KE Erickson, A Choudhury, G Pines, ... ACS Synthetic Biology 5 (12), 1566-1577, 2016 | 17 | 2016 |
| Determinants for Efficient Editing with Cas9-Mediated Recombineering in Escherichia coli A Choudhury, RG Fankhauser, EF Freed, EJ Oh, AB Morgenthaler, ... ACS Synthetic Biology 9 (5), 1083-1099, 2020 | 16 | 2020 |
| Genomic Deoxyxylulose Phosphate Reductoisomerase (DXR) Mutations Conferring Resistance to the Antimalarial Drug Fosmidomycin in E. coli G Pines, EJ Oh, MC Bassalo, A Choudhury, AD Garst, RG Fankhauser, ... ACS synthetic biology 7 (12), 2824-2832, 2018 | 13 | 2018 |
| Integrating CRISPR-enabled trackable genome engineering and transcriptomic analysis of global regulators for antibiotic resistance selection and identification in Escherichia coli C Chen, A Choudhury, S Zhang, AD Garst, X Song, X Liu, T Chen, RT Gill, ... Msystems 5 (2), 10.1128/msystems. 00232-20, 2020 | 12 | 2020 |
| Complex systems in metabolic engineering JD Winkler, K Erickson, A Choudhury, AL Halweg-Edwards, RT Gill Current opinion in biotechnology 36, 107-114, 2015 | 12 | 2015 |
| Deep mutational scanning reveals the molecular determinants of RNA polymerase-mediated adaptation and tradeoffs A Choudhury, B Gachet, Z Dixit, R Faure, RT Gill, O Tenaillon Nature communications 14 (1), 6319, 2023 | 3 | 2023 |
| Engineering global regulators for enhanced tolerance to multiple inhibitors by CRISPR‐enabled trackable genome engineering X Song, Y Zheng, S Li, A Choudhury, X Liu, T Chen, RT Gill, Z Wang AIChE Journal 69 (4), e18031, 2023 | 2 | 2023 |
Ryan T. GillUniversity of Colorado, Renewable and Sustainable Energy InstituteCorreu electrònic verificat a colorado.edu