| Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... eLife 10, e65088, 2021 | 1501 | 2021 |
| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1402 | 2019 |
| Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ... Cell Host & Microbe 24 (1), 133-145. e5, 2018 | 1189 | 2018 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 835 | 2019 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature Communications 11 (1), 1-10, 2020 | 558* | 2020 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023 | 535 | 2023 |
| Strain-level microbial epidemiology and population genomics from shotgun metagenomics M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ... Nature Methods 13 (5), 435-438, 2016 | 440 | 2016 |
| The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell Host & Microbe 26 (5), 577-578, 2019 | 400 | 2019 |
| Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferrretti, ... mSystems 2 (1), e00164-16, 2017 | 382* | 2017 |
| Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission S Duranti, GA Lugli, L Mancabelli, F Armanini, F Turroni, K James, ... Microbiome 5 (1), 66, 2017 | 324 | 2017 |
| Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ... Nature Medicine 28 (3), 535-544, 2022 | 296 | 2022 |
| The person-to-person transmission landscape of the gut and oral microbiomes M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ... Nature 614 (7946), 125-135, 2023 | 282 | 2023 |
| Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ... npj Biofilms and Microbiomes 3 (1), 14, 2017 | 192 | 2017 |
| Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants DV Ward, M Scholz, M Zolfo, DH Taft, KR Schibler, A Tett, N Segata, ... Cell Reports 14 (12), 2912-2924, 2016 | 181 | 2016 |
| MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples M Zolfo, A Tett, O Jousson, C Donati, N Segata Nucleic acids research 45 (2), e7-e7, 2016 | 119 | 2016 |
| Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ... Genome Biology 22 (1), 209, 2021 | 112 | 2021 |
| Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ... Genome Biology 21 (1), 1-27, 2020 | 107 | 2020 |
| Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics P Ghensi, P Manghi, M Zolfo, F Armanini, E Pasolli, M Bolzan, A Bertelle, ... npj Biofilms and Microbiomes 6 (1), 47, 2020 | 104 | 2020 |
| Detecting contamination in viromes using ViromeQC M Zolfo, F Pinto, F Asnicar, P Manghi, A Tett, FD Bushman, N Segata Nature biotechnology 37 (12), 1408-1412, 2019 | 97 | 2019 |
| Longitudinal survey of microbiome associated with particulate matter in a megacity N Qin, P Liang, C Wu, G Wang, Q Xu, X Xiong, T Wang, M Zolfo, N Segata, ... Genome Biology 21 (1), 1-11, 2020 | 92 | 2020 |
Nicola SegataDepartment CIBIO, University of TrentoCorreu electrònic verificat a unitn.it