Christian L. Müller

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Richard BonneauGenentechCorreu electrònic verificat a gene.com
Ivo F. SbalzariniTU Dresden & Max Planck Institute of Molecular Cell Biology and GeneticsCorreu electrònic verificat a mpi-cbg.de
Zachary D KurtzGinkgo BioworksCorreu electrònic verificat a ginkgobioworks.com
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityCorreu electrònic verificat a cabm.rutgers.edu
SURYANARAYANA MADDUCenter for Computational Biology, Flatiron Institute; Harvard QBioCorreu electrònic verificat a flatironinstitute.org
Emily R MiraldiCincinnati Children's HospitalCorreu electrònic verificat a cchmc.org
Johannes OstnerLudwig Maximilians Universität MünchenCorreu electrònic verificat a stat.uni-muenchen.de
Fabian J TheisHelmholtz Munich, Technical University of MunichCorreu electrònic verificat a helmholtz-muenchen.de
Irina GaynanovaUniversity of MichiganCorreu electrònic verificat a umich.edu
Patrick L. CombettesDepartment of Mathematics, North Carolina State UniversityCorreu electrònic verificat a math.ncsu.edu
Johannes LedererProfessor of Data-Driven Methods, University of HamburgCorreu electrònic verificat a uni-hamburg.de
Dan LittmanSkirball Institute, NYU School of MedicineCorreu electrònic verificat a med.nyu.edu
Bevan Leslie CheesemanDataflight Solutions Ltd.Correu electrònic verificat a dataflight.dev
Sebastian Urban StichCISPA Helmholtz CenterCorreu electrònic verificat a cispa.de
Laura TiptonJames Madison UniversityCorreu electrònic verificat a jmu.edu
Laurence HuangUniversity of California San FranciscoCorreu electrònic verificat a php.ucsf.edu
Stefanie PeschelLudwig-Maximilians-Universität MünchenCorreu electrònic verificat a stat.uni-muenchen.de
Anne-Laure BoulesteixLudwig-Maximilians-Universität MünchenCorreu electrònic verificat a ibe.med.uni-muenchen.de
Thomas W. BattagliaThe Netherlands Cancer Institute (NKI)Correu electrònic verificat a nyu.edu
Dominik SturmTU Dresden; Max Planck Institute of Molecular Cell Biology and Genetics; ScaDS.AICorreu electrònic verificat a mpi-cbg.de

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Christian L. Müller

Helmholtz Munich; Ludwig-Maximilians-Universität München; Flatiron Institute, New York

Correu electrònic verificat a helmholtz-munich.de - Pàgina d'inici

Statistics optimization microbiome microbial ecology computational biology


Títol Ordena per cites Ordena per any Ordena per títol	Citada per Citada per	Any
Sparse and compositionally robust inference of microbial ecological networks ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau PLoS computational biology 11 (5), e1004226, 2015	1457	2015
Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics, 1-23, 2023	564	2023
NetCoMi: network construction and comparison for microbiome data in R S Peschel, CL Müller, E von Mutius, AL Boulesteix, M Depner Briefings in Bioinformatics, 2020	317	2020
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016	261	2016
scCODA is a Bayesian model for compositional single-cell data analysis M Buettner, J Ostner, CL Mueller, FJ Theis, B Schubert Nature communications 12 (1), 6876, 2021	222	2021
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ... Genome medicine 8, 1-20, 2016	189	2016
Fungi stabilize connectivity in the lung and skin microbial ecosystems L Tipton, CL Müller, ZD Kurtz, L Huang, E Kleerup, A Morris, R Bonneau, ... Microbiome 6, 1-14, 2018	186	2018
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity VE Ruiz, T Battaglia, ZD Kurtz, L Bijnens, A Ou, I Engstrand, X Zheng, ... Nature communications 8 (1), 518, 2017	133	2017
Microbial networks in SPRING-Semi-parametric rank-based correlation and partial correlation estimation for quantitative microbiome data G Yoon, I Gaynanova, CL Müller Frontiers in genetics 10, 516, 2019	112	2019
4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ... PLoS computational biology 12 (3), e1004780, 2016	96	2016
Inverse Dirichlet weighting enables reliable training of physics informed neural networks S Maddu, D Sturm, CL Müller, IF Sbalzarini Machine Learning: Science and Technology 3 (1), 015026, 2022	90	2022
Don't fall for tuning parameters: tuning-free variable selection in high dimensions with the TREX J Lederer, C Müller Proceedings of the AAAI conference on artificial intelligence 29 (1), 2015	77	2015
Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing T Äijö, CL Müller, R Bonneau Bioinformatics 34 (3), 372-380, 2018	75	2018
Robust classification of protein variation using structural modelling and large-scale data integration EH Baugh, R Simmons-Edler, CL Müller, RF Alford, N Volfovsky, AE Lash, ... Nucleic acids research 44 (6), 2501-2513, 2016	75	2016
Optimization of convex functions with random pursuit SU Stich, CL Muller, B Gartner SIAM Journal on Optimization 23 (2), 1284-1309, 2013	66	2013
Particle swarm CMA evolution strategy for the optimization of multi-funnel landscapes CL Muller, B Baumgartner, IF Sbalzarini Evolutionary Computation, 2009. CEC'09. IEEE Congress on, 2685-2692, 2009	65	2009
The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli H Temmel, C Müller, M Sauert, O Vesper, A Reiss, J Popow, J Martinez, ... Nucleic acids research 45 (8), 4708-4721, 2017	61	2017
Global characterization of the CEC 2005 fitness landscapes using fitness-distance analysis CL Müller, IF Sbalzarini Applications of Evolutionary Computation: EvoApplications 2011: EvoCOMPLEX …, 2011	59	2011
Shrinkage improves estimation of microbial associations under different normalization methods M Badri, ZD Kurtz, R Bonneau, CL Müller NAR genomics and bioinformatics 2 (4), lqaa100, 2020	58*	2020
Perspective functions: Proximal calculus and applications in high-dimensional statistics PL Combettes, CL Müller Journal of Mathematical Analysis and Applications 457 (2), 1283-1306, 2018	55	2018

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