| Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences TH Olsen, F Boyles, CM Deane Protein Science 31 (1), 141-146, 2022 | 227 | 2022 |
| AbLang: an antibody language model for completing antibody sequences TH Olsen, IH Moal, CM Deane Bioinformatics Advances 2 (1), vbac046, 2022 | 153 | 2022 |
| AnOxPePred: Using deep learning for the prediction of antioxidative properties of peptides TH Olsen, B Yesiltas, FI Marin, M Pertseva, PJ García-Moreno, ... Scientific reports 10 (1), 21471, 2020 | 124 | 2020 |
| Identification of emulsifier potato peptides by bioinformatics: Application to omega-3 delivery emulsions and release from potato industry side streams PJ García-Moreno, S Gregersen, ER Nedamani, TH Olsen, P Marcatili, ... Scientific Reports 10 (1), 690, 2020 | 68 | 2020 |
| TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes KK Jensen, V Rantos, EC Jappe, TH Olsen, MC Jespersen, V Jurtz, ... Scientific reports 9 (1), 14530, 2019 | 57 | 2019 |
| Antioxidant peptides derived from potato, seaweed, microbial and spinach proteins: Oxidative stability of 5% fish oil-in-water emulsions B Yesiltas, PJ García-Moreno, S Gregersen, TH Olsen, NC Jones, ... Food Chemistry 385, 132699, 2022 | 52 | 2022 |
| proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking F Ambrosetti, TH Olsen, PP Olimpieri, B Jiménez-García, E Milanetti, ... Bioinformatics 36 (20), 5107-5108, 2020 | 48 | 2020 |
| Emulsifier peptides derived from seaweed, methanotrophic bacteria, and potato proteins identified by quantitative proteomics and bioinformatics B Yesiltas, S Gregersen, L Lægsgaard, ML Brinch, TH Olsen, P Marcatili, ... Food Chemistry 362, 130217, 2021 | 34 | 2021 |
| The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures B Abanades, TH Olsen, MIJ Raybould, B Aguilar-Sanjuan, WK Wong, ... Nucleic Acids Research 52 (D1), D545-D551, 2024 | 26 | 2024 |
| Biofunctionality of Enzymatically Derived Peptides from Codfish (Gadus morhua) Frame: Bulk In Vitro Properties, Quantitative Proteomics, and Bioinformatic … A Jafarpour, S Gregersen, R Marciel Gomes, P Marcatili, ... Marine Drugs 18 (12), 599, 2020 | 23 | 2020 |
| Addressing the antibody germline bias and its effect on language models for improved antibody design TH Olsen, IH Moal, CM Deane Bioinformatics 40 (11), btae618, 2024 | 22* | 2024 |
| Antifold: Improved antibody structure-based design using inverse folding MH Høie, A Hummer, TH Olsen, B Aguilar-Sanjuan, M Nielsen, ... arXiv preprint arXiv:2405.03370, 2024 | 22* | 2024 |
| KA-Search, a method for rapid and exhaustive sequence identity search of known antibodies TH Olsen, B Abanades, IH Moal, CM Deane Scientific Reports 13 (1), 11612, 2023 | 10 | 2023 |
| Physical and oxidative stability of fish oil-in-water emulsions stabilized with emulsifier peptides derived from seaweed, methanotrophic bacteria and potato proteins B Yesiltas, AMS Caindec, PJ García-Moreno, SG Echers, TH Olsen, ... Colloids and Surfaces A: Physicochemical and Engineering Aspects 663, 131069, 2023 | 10 | 2023 |
| Is Gigartina a potential source of food protein and functional peptide-based ingredients? Evaluating an industrial, pilot-scale extract by proteomics and bioinformatics SG Echers, N Abdul-Khalek, RK Mikkelsen, SL Holdt, C Jacobsen, ... Future Foods 6, 100189, 2022 | 10 | 2022 |
| Antioxidant peptides from alternative sources reduce lipid oxidation in 5% fish oil-in-water emulsions (pH 4) and fish oil-enriched mayonnaise E Varona, PJ García-Moreno, SG Echers, TH Olsen, P Marcatili, ... Food Chemistry 426, 136498, 2023 | 9 | 2023 |
| Is Gigartina a potential source of food protein and functional peptide-based ingredients S Gregersen Echers, N Abdul-Khalek, RK Mikkelsen, SL Holdt, ... Evaluating an industrial, pilot-scale extract by proteomics and …, 2022 | 6 | 2022 |
| The Observed T Cell Receptor Space database enables paired-chain repertoire mining, coherence analysis, and language modeling MIJ Raybould, A Greenshields-Watson, P Agarwal, B Aguilar-Sanjuan, ... Cell Reports 43 (9), 2024 | 4 | 2024 |
| KA-Search: Rapid and exhaustive sequence identity search of known antibodies TH Olsen, B Abanades, IH Moal, CM Deane bioRxiv, 2022.11. 01.513855, 2022 | 3 | 2022 |
| Phosphocholine-Decorated PPI-Dendrimers Mimic Cell Membrane Phosphocholine Clusters and Tune the Innate Immune Activity of C-Reactive Protein U Boas, MM Daoud, S Meier, TH Olsen, K Gehring, DJ Mogensen, ... Biomacromolecules 22 (4), 1664-1674, 2021 | 2 | 2021 |