Deep learning driven biosynthetic pathways navigation for natural products with BioNavi-NP S Zheng, T Zeng, C Li, B Chen, CW Coley, Y Yang, R Wu Nature Communications 13 (1), 3342, 2022 | 85 | 2022 |
TeroKit: a database-driven web server for terpenome research T Zeng, Z Liu, J Zhuang, Y Jiang, W He, H Diao, N Lv, Y Jian, D Liang, ... Journal of Chemical Information and Modeling 60 (4), 2082-2090, 2020 | 51 | 2020 |
Exploring chemical and biological space of terpenoids T Zeng, Z Liu, H Liu, W He, X Tang, L Xie, R Wu Journal of Chemical Information and Modeling 59 (9), 3667-3678, 2019 | 37 | 2019 |
Chemotaxonomic investigation of plant terpenoids with an established database (TeroMOL) T Zeng, Y Chen, Y Jian, F Zhang, R Wu New Phytologist 235 (2), 662-673, 2022 | 23 | 2022 |
Enzymatic plasticity inspired by the diterpene cyclase CotB2 X Tang, F Zhang, T Zeng, W Li, S Yin, R Wu ACS Chemical Biology 15 (10), 2820-2832, 2020 | 15 | 2020 |
QM/MM modeling aided enzyme engineering in natural products biosynthesis F Zhang, T Zeng, R Wu Journal of Chemical Information and Modeling 63 (16), 5018-5034, 2023 | 9 | 2023 |
Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit N Chen, R Zhang, T Zeng, X Zhang, R Wu Database 2023, baad020, 2023 | 9 | 2023 |
Bio-inspired chemical space exploration of terpenoids T Zeng, BA Hess Jr, F Zhang, R Wu Briefings in Bioinformatics, 2022 | 7 | 2022 |
GM-DockZn: a geometry matching-based docking algorithm for zinc proteins K Wang, N Lyu, H Diao, S Jin, T Zeng, Y Zhou, R Wu Bioinformatics 36 (13), 4004-4011, 2020 | 7 | 2020 |
Developing bionavi for hybrid retrosynthesis planning T Zeng, Z Jin, S Zheng, T Yu, R Wu JACS Au 4 (7), 2492-2502, 2024 | 6 | 2024 |
From functional plasticity of two diterpene synthases (IrTPS2/IrKSL3a) to enzyme evolution B Jin, K Xu, J Guo, Y Ma, J Yang, N Chen, T Zeng, J Wang, J Liu, M Tian, ... ACS Catalysis 14 (5), 2959-2970, 2024 | 4 | 2024 |
NIMO: a natural product-inspired molecular generative model based on conditional transformer X Shen, T Zeng, N Chen, J Li, R Wu Molecules 29 (8), 1867, 2024 | 3 | 2024 |
Data-driven prediction and design for enzymatic reactions T ZENG, R WU Synthetic Biology Journal 4 (3), 535, 2023 | 3* | 2023 |
Natural Product Databases for Drug Discovery: Features and Applications T Zeng, J Li, R Wu Pharmaceutical Science Advances, 100050, 2024 | 1 | 2024 |
TarIKGC: A Target Identification Tool Using Semantics-Enhanced Knowledge Graph Completion with Application to CDK2 Inhibitor Discovery X Shen, S Yan, T Zeng, F Xia, D Jiang, G Wan, D Cao, R Wu Journal of Medicinal Chemistry, 2025 | | 2025 |
Corrigendum to “Natural product databases for drug discovery: Features and applications”[Pharmaceut. Sci. Adv. 2 (2024) 100050] T Zeng, J Li, R Wu Pharmaceutical Science Advances 2, 100054, 2024 | | 2024 |
EnzymeCAGE: A Geometric Foundation Model for Enzyme Retrieval with Evolutionary Insights Y Liu, C Hua, T Zeng, J Rao, Z Zhang, R Wu, CW Coley, S Zheng bioRxiv, 2024.12. 15.628585, 2024 | | 2024 |