Nanoscale chromatin imaging and analysis platform bridges 4D chromatin organization with molecular function Y Li, A Eshein, RKA Virk, A Eid, W Wu, J Frederick, D VanDerway, ... Science advances 7 (1), eabe4310, 2021 | 55 | 2021 |
Chromatin reprogramming and bone regeneration in vitro and in vivo via the microtopography-induced constriction of cell nuclei X Wang, V Agrawal, CL Dunton, Y Liu, RKA Virk, PA Patel, L Carter, ... Nature biomedical engineering 7 (11), 1514-1529, 2023 | 36 | 2023 |
Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization A Kant, Z Guo, V Vinayak, MV Neguembor, WS Li, V Agrawal, E Pujadas, ... Nature communications 15 (1), 4338, 2024 | 9 | 2024 |
Depletion of lamins B1 and B2 promotes chromatin mobility and induces differential gene expression by a mesoscale-motion-dependent mechanism EM Pujadas Liwag, X Wei, N Acosta, LM Carter, J Yang, LM Almassalha, ... Genome biology 25 (1), 77, 2024 | 9 | 2024 |
Nanoscale Chromatin Imaging and Analysis (nano-ChIA) platform bridges 4-D chromatin organization with molecular function Y Li, A Eshein, R Virk, A Eid, W Wu, J Frederick, D VanDerway, ... bioRxiv, 2020 | 7 | 2020 |
Nuclear blebs are associated with destabilized chromatin-packing domains EM Pujadas Liwag, N Acosta, LM Almassalha, YP Su, R Gong, ... Journal of Cell Science 138 (3), 2025 | 4 | 2025 |
Decreased DNA density is a better indicator of a nuclear bleb than lamin B loss S Bunner, K Prince, EM Pujadas Liwag, N Eskndir, K Srikrishna, ... Journal of Cell Science 138 (3), 2025 | 4 | 2025 |
Depletion of lamins B1 and B2 alters chromatin mobility and induces differential gene expression by a mesoscale-motion dependent mechanism EM Pujadas, X Wei, N Acosta, L Carter, J Yang, L Almassalha, ... bioRxiv, 2023.06. 26.546573, 2023 | 4 | 2023 |
Local volume concentration, packing domains, and scaling properties of chromatin MA Carignano, M Kröger, LM Almassalha, V Agrawal, WS Li, ... Elife 13, RP97604, 2024 | 3 | 2024 |
Nuclear blebs are associated with destabilized chromatin packing domains EMP Liwag, N Acosta, LM Almassalha, YP Su, R Gong, MT Kanemaki, ... bioRxiv, 2024 | 3 | 2024 |
Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure AR Shim, J Frederick, EM Pujadas, T Kuo, IC Ye, JA Pritchard, CL Dunton, ... Plos one 19 (5), e0301000, 2024 | 2 | 2024 |
Chromatin packing domains persist after rad21 depletion in 3d WS Li, LM Carter, LM Almassalha, EM Pujadas-Liwag, T Kuo, ... biorxiv, 2024.03. 02.582972, 2024 | 2 | 2024 |
Chromatin conformation, gene transcription, and nucleosome remodeling as an emergent system LM Almassalha, M Carignano, EP Liwag, WS Li, R Gong, N Acosta, ... Science Advances 11 (2), eadq6652, 2025 | 1 | 2025 |
Deep Learning-driven Automatic Nuclei Segmentation of Label-free Live Cell Chromatin-sensitive Partial Wave Spectroscopic Microscopy Imaging MDS Alom, A Daneshkhah, N Acosta, N Anthony, EP Liwag, V Backman, ... bioRxiv, 2024 | 1 | 2024 |
Electron Tomography Finds Three-Dimensional Chromatin Packing Domain Structure in Single Cell Different from Topological Associated Domains WS Li, L Carter, L Almassalha, E Pujadas, M Carignano, R Bleher, ... Microscopy and Microanalysis 30 (Supplement_1), ozae044. 361, 2024 | 1 | 2024 |
Mature chromatin packing domains persist after RAD21 depletion in 3D WS Li, LM Carter, LM Almassalha, R Gong, EM Pujadas-Liwag, T Kuo, ... Science Advances 11 (4), eadp0855, 2025 | | 2025 |
Deep learning-driven automatic nuclei segmentation of live-cell chromatin-sensitive partial wave spectroscopic microscopy imaging MS Alom, A Daneshkhah, N Acosta, N Anthony, E Pujadas Liwag, ... Optics Express 32 (25), 45052-45074, 2024 | | 2024 |
Data from: Depletion of lamins B1 and B2 promotes chromatin mobility and induces differential gene expression by a mesoscale-motion dependent mechanism E Pujadas Liwag, X Wei, N Acosta, L Carter, J Yang, L Almassalha, S Jain, ... (No Title), 2024 | | 2024 |
mRNA expression is co-regulated by non-nucleolar RNA polymerase I LM Carter, R Gong, N Acosta, L Almassalha, E Pujadas Liwag, T Kuo, ... bioRxiv, 2024.10. 01.615958, 2024 | | 2024 |
Nanoimaging and Targeted Protein Degradation to Assess Chromatin Conformation, Connectivity, and Gene Expression EMP Liwag Northwestern University, 2024 | | 2024 |