James M. Ferguson

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Ira DevesonGarvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Hasindu GamaarachchiSchool of Computer Science and Engineering, UNSW SydneyE-mailová adresa ověřena na: garvan.org.au
Jillian M. HammondGarvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Martin A. SmithRamaciotti Centre for Genomics & UNSW SydneyE-mailová adresa ověřena na: unsw.edu.au
Kirston BartonResearch Development Lead, University of SydneyE-mailová adresa ověřena na: sydney.edu.au
Thiruni N AdikariPostdoctoral Scientist, University of OxfordE-mailová adresa ověřena na: paediatrics.ox.ac.uk
Fabio LucianiProfessor, University of New South Wales, Sydney, AustraliaE-mailová adresa ověřena na: unsw.edu.au
Rowena BullUniversity of New South WalesE-mailová adresa ověřena na: unsw.edu.au
Timothy G. AmosBioinformatics Software Engineer, Garvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Sri ParameswaranProfessor of Computer Engineering, The University of SydneyE-mailová adresa ověřena na: sydney.edu.au
Alexander SwarbrickDirector, Cancer Ecosystems Program, Garvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Katherine JL JacksonGarvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Chris GoodnowGarvan Institute of Medical Research, University of New South Wales SydneyE-mailová adresa ověřena na: garvan.org.au
Ghamdan Al-EryaniBroad Institute of MIT and HarvardE-mailová adresa ověřena na: broadinstitute.org
John-Sebastian EdenSenior Research Fellow; Westmead Institute of Medical Research & University of SydneyE-mailová adresa ověřena na: sydney.edu.au
Ksenia SkvortsovaLaboratory Head, Senior Research Fellow, Garvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Tri Giang PhanGarvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Simon JunankarGarvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
James BlackburnGroup Leader, Garvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au
Daniel L RodenGarvan Institute of Medical ResearchE-mailová adresa ověřena na: garvan.org.au

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James M. Ferguson

Genomic Software Engineer, Garvan Institute

E-mailová adresa ověřena na: garvan.org.au

nanopore bioinformatics


Název Seřadit podle citací Seřadit podle roku Seřadit podle názvu	Citace Citace	Rok
High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes M Singh, G Al-Eryani, S Carswell, JM Ferguson, J Blackburn, K Barton, ... Nature communications 10 (1), 1-13, 2019	302	2019
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ... Nature communications 11 (1), 6272, 2020	277	2020
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ... Science advances 8 (9), eabm5386, 2022	137	2022
Fast nanopore sequencing data analysis with SLOW5 H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ... Nature biotechnology 40 (7), 1026-1029, 2022	87	2022
Molecular barcoding of native RNAs using nanopore sequencing and deep learning MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ... Genome Research 30 (9), 1345-1353, 2020	82*	2020
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity Q Du, GC Smith, PL Luu, JM Ferguson, NJ Armstrong, CE Caldon, ... Cell Reports 36 (12), 2021	57	2021
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome RJ Edwards, MA Field, JM Ferguson, O Dudchenko, J Keilwagen, ... BMC genomics 22, 1-19, 2021	39	2021
Accelerated nanopore basecalling with SLOW5 data format H Samarakoon, JM Ferguson, H Gamaarachchi, IW Deveson Bioinformatics 39 (6), btad352, 2023	28	2023
SquiggleKit: a toolkit for manipulating nanopore signal data JM Ferguson, MA Smith Bioinformatics 35 (24), 5372-5373, 2019	28	2019
Flexible and efficient handling of nanopore sequencing signal data with slow5tools H Samarakoon, JM Ferguson, SP Jenner, TG Amos, S Parameswaran, ... Genome Biology 24 (1), 69, 2023	24	2023
Genopo: a nanopore sequencing analysis toolkit for portable Android devices H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ... Communications biology 3 (1), 538, 2020	23	2020
Simulation of nanopore sequencing signal data with tunable parameters H Gamaarachchi, JM Ferguson, H Samarakoon, K Liyanage, IW Deveson Genome Research 34 (5), 778-783, 2024	18*	2024
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ... Bioinformatics 38 (5), 1443-1446, 2022	16	2022
CAR⁺ and CAR⁻ T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies RHY Louie, C Cai, J Samir, M Singh, IW Deveson, JM Ferguson, TG Amos, ... Nature Communications 14 (1), 7767, 2023	13	2023
Video disc player having vertical timing signal generator JM Ferguson, TY Chen, WG Gibson US Patent 4,409,626, 1983	8	1983
Interactive visualization of nanopore sequencing signal data with Squigualiser H Samarakoon, K Liyanage, JM Ferguson, S Parameswaran, ... Bioinformatics 40 (8), btae501, 2024	7	2024
Epidemiological and genomic analysis of a Sydney hospital COVID-19 outbreak E Tennant, M Figtree, J Tallon, RA Bull, M Yeang, IW Deveson, ... medRxiv, 2021.02. 17.21251943, 2021	3	2021
Nanopore sequencing and data analysis for base-resolution genome-wide 5-methylcytosine profiling A Angeloni, J Ferguson, O Bogdanovic Chromatin: Methods and Protocols, 75-94, 2022	2	2022
Repeat-Rich Regions Cause False-Positive Detection of NUMTs: A Case Study in Amphibians Using an Improved Cane Toad Reference Genome K Cheung, LA Rollins, JM Hammond, K Barton, JM Ferguson, HJF Eyck, ... Genome Biology and Evolution 16 (11), evae246, 2024	1	2024
Nanopore-and AI-empowered metagenomic viability inference H Urel, S Benassou, T Reska, H Marti, E Rayo, EJ Martin, M Schloter, ... bioRxiv, 2024.06. 10.598221, 2024	1	2024

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