| LNCipedia 5: towards a reference set of human long non-coding RNAs PJ Volders, J Anckaert, K Verheggen, J Nuytens, L Martens, P Mestdagh, ... Nucleic acids research 47 (D1), D135-D139, 2019 | 505 | 2019 |
| An update on LNCipedia: a database for annotated human lncRNA sequences PJ Volders, K Verheggen, G Menschaert, K Vandepoele, L Martens, ... Nucleic acids research 43 (D1), D174-D180, 2015 | 412 | 2015 |
| SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ... Genome research 28 (3), 396-411, 2018 | 392 | 2018 |
| Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows K Verheggen, H Ræder, FS Berven, L Martens, H Barsnes, M Vaudel Mass spectrometry reviews 39 (3), 292-306, 2020 | 150 | 2020 |
| Exploring the potential of public proteomics data M Vaudel, K Verheggen, A Csordas, H Ræder, FS Berven, L Martens, ... Proteomics 16 (2), 214-225, 2016 | 101 | 2016 |
| Toward more transparent and reproducible omics studies through a common metadata checklist and data publications E Kolker, V Özdemir, L Martens, W Hancock, G Anderson, N Anderson, ... Omics: a journal of integrative biology 18 (1), 10-14, 2014 | 76 | 2014 |
| moFF: a robust and automated approach to extract peptide ion intensities A Argentini, LJE Goeminne, K Verheggen, N Hulstaert, A Staes, ... Nature methods 13 (12), 964-966, 2016 | 66 | 2016 |
| Noncoding after all: biases in proteomics data do not explain observed absence of lncRNA translation products K Verheggen, PJ Volders, P Mestdagh, G Menschaert, P Van Damme, ... Journal of proteome research 16 (7), 2508-2515, 2017 | 44 | 2017 |
| Database search engines: Paradigms, challenges and solutions K Verheggen, L Martens, FS Berven, H Barsnes, M Vaudel Modern Proteomics–Sample Preparation, Analysis and Practical Applications …, 2016 | 28 | 2016 |
| Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory K Verheggen, H Barsnes, L Martens Proteomics 14 (4-5), 367-377, 2014 | 28 | 2014 |
| Exercise-induced immunosuppression: roles of reactive oxygen species and 5′-AMP-activated protein kinase dephosphorylation within immune cells H Moir, MG Hughes, S Potter, C Sims, LR Butcher, NA Davies, ... Journal of applied physiology 108 (5), 1284-1292, 2010 | 26 | 2010 |
| Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ... Genome research 28 (7), 1096, 2018 | 17 | 2018 |
| Pladipus enables universal distributed computing in proteomics bioinformatics K Verheggen, D Maddelein, N Hulstaert, L Martens, H Barsnes, M Vaudel Journal of Proteome Research 15 (3), 707-712, 2016 | 12 | 2016 |
| Ten years of public proteomics data: How things have evolved, and where the next ten years should lead us K Verheggen, L Martens EuPA open proteomics 8, 28-35, 2015 | 6 | 2015 |
| Unbiased protein association study on the public human proteome reveals biological connections between co-occurring protein pairs S Gupta, K Verheggen, J Tavernier, L Martens Journal of proteome research 16 (6), 2204-2212, 2017 | 5 | 2017 |
| MS1-based data analysis approaches for FFPE tissue imaging of endogenous peptide ions by mass spectrometry histochemistry (MSHC) N Bhattacharya, K Nagornov, K Verheggen, M Verhaert, R Sciot, ... Imaging Mass Spectrometry: Methods and Protocols, 187-202, 2023 | 4 | 2023 |
| HistoSnap: A Novel Software Tool to Extract m/z-Specific Images from Large MSHC Datasets K Verheggen, N Bhattacharya, M Verhaert, B Goossens, R Sciot, ... Imaging Mass Spectrometry: Methods and Protocols, 15-26, 2023 | 3 | 2023 |
| Reproducibility in modern day open science is a keystone beyond intentions K Verheggen Retrieved on 11 (12), 2017, 2016 | 1 | 2016 |
| Ribosome profiling enables the discovery of small open reading frames (sORFs), a new source of bioactive peptides V Olexiouk, S Verbruggen, J Crappé, K Verheggen, L Martens, ... | 1 | 2015 |
| How to till a growing field: large-scale re-analysis of public proteomics data K Verheggen Ghent University, 2018 | | 2018 |
