| Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... | 1484 | 2020 |
| Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019 | 1051 | 2019 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 827 | 2019 |
| Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature Medicine, 1-12, 2021 | 773 | 2021 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023 | 558 | 2023 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 546 | 2020 |
| Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ... Nature Medicine 28 (2), 315-324, 2022 | 406 | 2022 |
| Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism JL Fachi, J de Souza Felipe, LP Pral, BK da Silva, RO Corrêa, ... Cell Reports 27 (3), 750-761. e7, 2019 | 312 | 2019 |
| Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ... Nature Medicine 28 (3), 535-544, 2022 | 293 | 2022 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 271 | 2021 |
| Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics LP Antunes, LF Martins, RV Pereira, AM Thomas, D Barbosa, LN Lemos, ... Scientific Reports 6, 2016 | 264 | 2016 |
| Multiple levels of the unknown in microbiome research AM Thomas, N Segata BMC biology 17 (1), 48, 2019 | 167 | 2019 |
| Tissue-associated bacterial alterations in rectal carcinoma patients revealed by 16S rRNA community profiling AM Thomas, EC de Jesus, A Lopes, S Aguiar Junior, MD Begnami, ... Frontiers in Cellular and Infection Microbiology 6, 179, 2016 | 143 | 2016 |
| Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment S Terrisse, L Derosa, V Iebba, F Ghiringhelli, I Vaz-Luis, G Kroemer, ... Cell Death & Differentiation 28 (9), 2778-2796, 2021 | 117 | 2021 |
| Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma G Ianiro, E Rossi, AM Thomas, G Schinzari, L Masucci, G Quaranta, ... Nature communications 11 (1), 4333, 2020 | 113 | 2020 |
| Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms AM Thomas, FO Gleber-Netto, GR Fernandes, M Amorim, LF Barbosa, ... BMC microbiology 14 (1), 1, 2014 | 108 | 2014 |
| Machine learning for microbiologists F Asnicar, AM Thomas, A Passerini, L Waldron, N Segata Nature Reviews Microbiology 22 (4), 191-205, 2024 | 91 | 2024 |
| A microbiota-modulated checkpoint directs immunosuppressive intestinal T cells into cancers M Fidelle, C Rauber, C Alves Costa Silva, AL Tian, I Lahmar, ... Science 380 (6649), eabo2296, 2023 | 88 | 2023 |
| Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples S Tarallo, G Ferrero, G Gallo, A Francavilla, G Clerico, AR Luc, P Manghi, ... mSystems 4 (5), e00289-19, 2019 | 70 | 2019 |
| Gut OncoMicrobiome Signatures (GOMS) as next-generation biomarkers for cancer immunotherapy AM Thomas, M Fidelle, B Routy, G Kroemer, JA Wargo, N Segata, ... Nature reviews Clinical oncology 20 (9), 583-603, 2023 | 67 | 2023 |
Nicola SegataDepartment CIBIO, University of TrentoE-mailová adresa ověřena na: unitn.it
