| Robust decomposition of cell type mixtures in spatial transcriptomics DM Cable, E Murray, LS Zou, A Goeva, EZ Macosko, F Chen, RA Irizarry Nature biotechnology 40 (4), 517-526, 2022 | 725 | 2022 |
| Large-scale topological changes restrain malignant progression in colorectal cancer SE Johnstone, A Reyes, Y Qi, C Adriaens, E Hegazi, K Pelka, JH Chen, ... Cell 182 (6), 1474-1489. e23, 2020 | 177 | 2020 |
| Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures V Rai, DX Quang, MR Erdos, DA Cusanovich, RM Daza, N Narisu, LS Zou, ... Molecular metabolism 32, 109-121, 2020 | 127 | 2020 |
| Cell type-specific inference of differential expression in spatial transcriptomics DM Cable, E Murray, V Shanmugam, S Zhang, LS Zou, M Diao, H Chen, ... Nature methods 19 (9), 1076-1087, 2022 | 88 | 2022 |
| Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates CK Sievers, LS Zou, PJ Pickhardt, KA Matkowskyj, DM Albrecht, L Clipson, ... Gut 66 (12), 2132-2140, 2017 | 52 | 2017 |
| BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues LS Zou, MR Erdos, DL Taylor, PS Chines, A Varshney, ... BMC genomics 19, 1-15, 2018 | 44 | 2018 |
| Augmenting and directing long-range CRISPR-mediated activation in human cells YE Tak, JE Horng, NT Perry, HT Schultz, S Iyer, Q Yao, LS Zou, MJ Aryee, ... Nature methods 18 (9), 1075-1081, 2021 | 25 | 2021 |
| Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures. Mol Metab. 2020; 32: 109–21 V Rai, DX Quang, MR Erdos, DA Cusanovich, RM Daza, N Narisu, LS Zou, ... J. MOLMET 6, 2019 | 8 | 2019 |
| Detection of allele-specific expression in spatial transcriptomics with spASE LS Zou, DM Cable, IA Barrera-Lopez, T Zhao, E Murray, MJ Aryee, ... Genome Biology 25 (1), 180, 2024 | 5 | 2024 |