Remo Rohs

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Ana Carolina Dantas MachadoUniversity of California, San DiegoE-mailová adresa ověřena na: alumni.usc.edu
Tianyin ZhouGoogleE-mailová adresa ověřena na: usc.edu
Richard S. MannProfessor of Biochemistry, Neuroscience and Systems Biology, Zuckerman Mind Brain Behavior InstituteE-mailová adresa ověřena na: columbia.edu
Lin YangGoogleE-mailová adresa ověřena na: usc.edu
Barry HonigColumbia UniversityE-mailová adresa ověřena na: columbia.edu
Tsu-Pei ChiuAssistant Professor (Teaching), University of Southern CaliforniaE-mailová adresa ověřena na: usc.edu
Iris DrorUniversity of California, Los Angeles (UCLA)E-mailová adresa ověřena na: mednet.ucla.edu
Harmen J. BussemakerColumbia UniversityE-mailová adresa ověřena na: columbia.edu
Peng LiuScientist, Department of Biostatistics and Medical Informatics & Carbone Cancer Center, UW-MadisonE-mailová adresa ověřena na: wisc.edu
Raluca GordanAssociate Professor, Duke UniversityE-mailová adresa ověřena na: duke.edu
Beibei XinPhD, University of Southern CaliforniaE-mailová adresa ověřena na: usc.edu
Rosa Di FeliceUniversity of Southern California, Los Angeles USA and CNR-NANO-S3 Italy (on leave)E-mailová adresa ověřena na: usc.edu
Matthew SlatteryUniversity of Minnesota Medical SchoolE-mailová adresa ověřena na: umn.edu
Rohit JoshiCDFD-HyderabadE-mailová adresa ověřena na: cdfd.org.in
Satyanarayan RaoAssistant Professor, IIT RoorkeeE-mailová adresa ověřena na: bt.iitr.ac.in
Jinsen LiUniversity of Southern CaliforniaE-mailová adresa ověřena na: usc.edu
Lin ChenProfessor of Biological Sciences and Chemistry, University of Southern CaliforniaE-mailová adresa ověřena na: usc.edu
Peter Z. QinProfessor of Chemistry, University of Southern CaliforniaE-mailová adresa ověřena na: usc.edu
Todd R. RileyAssistant Professor, UMass BostonE-mailová adresa ověřena na: umb.edu
Ning ShenZhejiang UniversityE-mailová adresa ověřena na: zju.edu.cn

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Remo Rohs

Professor and Chair of Quantitative and Computational Biology, University of Southern California

E-mailová adresa ověřena na: usc.edu - Domovská stránka

Computational Biology Structural Biology Bioinformatics Machine Learning Drug Design


Název Seřadit podle citací Seřadit podle roku Seřadit podle názvu	Citace Citace	Rok
The role of DNA shape in protein–DNA recognition R Rohs, SM West, A Sosinsky, P Liu, RS Mann, B Honig Nature 461 (7268), 1248-1253, 2009	1235	2009
Origins of specificity in protein-DNA recognition R Rohs, X Jin, SM West, R Joshi, B Honig, RS Mann Annual Review of Biochemistry 79, 233-269, 2010	1094	2010
Absence of a simple code: how transcription factors read the genome M Slattery, T Zhou, L Yang, AC Dantas Machado, R Gordân, R Rohs Trends in Biochemical Sciences 39 (9), 381-399, 2014	607	2014
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ... Cell 147 (6), 1270-1282, 2011	568	2011
Functional specificity of a Hox protein mediated by the recognition of minor groove structure R Joshi, JM Passner, R Rohs, R Jain, A Sosinsky, MA Crickmore, V Jacob, ... Cell 131 (3), 530-543, 2007	400	2007
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk Cell Reports 3 (4), 1093-1104, 2013	384	2013
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ... Nucleic Acids Research 41 (W1), W56-W62, 2013	344	2013
Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations R Rohs, I Bloch, H Sklenar, Z Shakked Nucleic Acids Research 33 (22), 7048-7057, 2005	317	2005
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs M Kitayner, H Rozenberg, R Rohs, O Suad, D Rabinovich, B Honig, ... Nature Structural & Molecular Biology 17 (4), 423-429, 2010	287	2010
Quantitative modeling of transcription factor binding specificities using DNA shape T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ... Proceedings of the National Academy of Sciences USA 112 (15), 4654-4659, 2015	268	2015
Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers I Barozzi, M Simonatto, S Bonifacio, L Yang, R Rohs, S Ghisletti, G Natoli Molecular Cell 54 (5), 844-857, 2014	254	2014
Methylene blue binding to DNA with alternating GC base sequence: a modeling study R Rohs, H Sklenar, R Lavery, B Röder Journal of the American Chemical Society 122 (12), 2860-2866, 2000	216	2000
Deconvolving the recognition of DNA shape from sequence N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ... Cell 161 (2), 307-318, 2015	210	2015
Probing DNA shape and methylation state on a genomic scale with DNase I A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ... Proceedings of the National Academy of Sciences USA 110 (16), 6376-6381, 2013	207	2013
Quantum annealing versus classical machine learning applied to a simplified computational biology problem RY Li, R Di Felice, R Rohs, DA Lidar npj Quantum Information 4 (1), 14, 2018	203	2018
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo GE Zentner, S Kasinathan, B Xin, R Rohs, S Henikoff Nature Communications 6, 8733, 2015	185	2015
A widespread role of the motif environment in transcription factor binding across diverse protein families I Dror, T Golan, C Levy, R Rohs, Y Mandel-Gutfreund Genome Research 25 (9), 1268-1280, 2015	175	2015
Unraveling determinants of transcription factor binding outside the core binding site M Levo, E Zalckvar, E Sharon, AC Dantas Machado, Y Kalma, ... Genome Research 25 (7), 1018-1029, 2015	172	2015
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs Bioinformatics 32 (8), 1211-1213, 2016	169	2016
DNA shape features improve transcription factor binding site predictions in vivo A Mathelier, B Xin, TP Chiu, L Yang, R Rohs, WW Wasserman Cell Systems 3 (3), 278-286, 2016	167	2016

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